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AT5G02860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G18940.1); Has 78068 Blast hits to 16233 proteins in 339 species: Archae - 4; Bacteria - 143; Metazoa - 1692; Fungi - 1544; Plants - 71427; Viruses - 0; Other Eukaryotes - 3258 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL162973EMBL:CP002688
EnsemblPlants:AT5G02860EnsemblPlants:AT5G02860.1entrez:831761Gene3D:1.25.40.10
GeneID:831761Genevisible:Q9LYZ9Gramene:AT5G02860.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF308HOGENOM:HOG000241317InParanoid:Q9LYZ9InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT5G02860OMA:FSEMKCSPaxDb:Q9LYZ9
Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:PF13812
Pfam:Q9LYZ9Pfscan:PS51375PhylomeDB:Q9LYZ9PIR:T48307
PRIDE:Q9LYZ9PRO:PR:Q9LYZ9PROSITE:PS51375ProteinModelPortal:Q9LYZ9
Proteomes:UP000006548RefSeq:NP_195906.1SMR:Q9LYZ9STRING:3702.AT5G02860.1
SUPFAM:SSF81901TAIR:AT5G02860TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.54692UniProt:Q9LYZ9
Coordinates (TAIR10) chr5:+:654102..656561
Molecular Weight (calculated) 92087.70 Da
IEP (calculated) 7.78
GRAVY (calculated) -0.31
Length 819 amino acids
Sequence (TAIR10)
(BLAST)
001: MADKLALPLL LPCTPSSKPY SHDQNHHISR TPFLTTSLSS PPPPPVEPLL HDVFLHQNPN SRQPISSQTS RNRNRTRIGK SRDPNLGKPW SYHGLSPQGQ
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)