AT3G57430.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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Experimental Localisations and PPI |
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FP Images |
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a chloroplast RNA editing factor. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
ORGANELLE TRANSCRIPT PROCESSING 84 (OTP84); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 46517 Blast hits to 13331 proteins in 240 species: Archae - 0; Bacteria - 7; Metazoa - 55; Fungi - 91; Plants - 45789; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:21255731..21258403 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 99281.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.31 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 890 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSCPLAFTFS LPSIFPFPSQ LLPFSRHKHP YLLRATPTSA TEDVASAVSG APSIFISQSR SPEWWIDLLR SKVRSNLLRE AVLTYVDMIV LGIKPDNYAF 101: PALLKAVADL QDMELGKQIH AHVYKFGYGV DSVTVANTLV NLYRKCGDFG AVYKVFDRIS ERNQVSWNSL ISSLCSFEKW EMALEAFRCM LDENVEPSSF 201: TLVSVVTACS NLPMPEGLMM GKQVHAYGLR KGELNSFIIN TLVAMYGKLG KLASSKVLLG SFGGRDLVTW NTVLSSLCQN EQLLEALEYL REMVLEGVEP 301: DEFTISSVLP ACSHLEMLRT GKELHAYALK NGSLDENSFV GSALVDMYCN CKQVLSGRRV FDGMFDRKIG LWNAMIAGYS QNEHDKEALL LFIGMEESAG 401: LLANSTTMAG VVPACVRSGA FSRKEAIHGF VVKRGLDRDR FVQNTLMDMY SRLGKIDIAM RIFGKMEDRD LVTWNTMITG YVFSEHHEDA LLLLHKMQNL 501: ERKVSKGASR VSLKPNSITL MTILPSCAAL SALAKGKEIH AYAIKNNLAT DVAVGSALVD MYAKCGCLQM SRKVFDQIPQ KNVITWNVII MAYGMHGNGQ 601: EAIDLLRMMM VQGVKPNEVT FISVFAACSH SGMVDEGLRI FYVMKPDYGV EPSSDHYACV VDLLGRAGRI KEAYQLMNMM PRDFNKAGAW SSLLGASRIH 701: NNLEIGEIAA QNLIQLEPNV ASHYVLLANI YSSAGLWDKA TEVRRNMKEQ GVRKEPGCSW IEHGDEVHKF VAGDSSHPQS EKLSGYLETL WERMRKEGYV 801: PDTSCVLHNV EEDEKEILLC GHSEKLAIAF GILNTSPGTI IRVAKNLRVC NDCHLATKFI SKIVDREIIL RDVRRFHRFK NGTCSCGDYW |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)