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AT3G57430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At3g57430-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Encodes a chloroplast RNA editing factor.
Computational
Description (TAIR10)
ORGANELLE TRANSCRIPT PROCESSING 84 (OTP84); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 46517 Blast hits to 13331 proteins in 240 species: Archae - 0; Bacteria - 7; Metazoa - 55; Fungi - 91; Plants - 45789; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL133248EMBL:BT008634
EMBL:CP002686EnsemblPlants:AT3G57430EnsemblPlants:AT3G57430.1entrez:824910
Gene3D:1.25.40.10GeneID:824910Genevisible:Q7Y211GO:GO:0006397
GO:GO:0008270GO:GO:0009507GO:GO:0031425Gramene:AT3G57430.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF96HOGENOM:HOG000237570InParanoid:Q7Y211
InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867KEGG:ath:AT3G57430
OMA:GREAHAFPaxDb:Q7Y211Pfam:PF01535Pfam:PF13041
Pfam:PF14432Pfam:Q7Y211Pfscan:PS51375PhylomeDB:Q7Y211
PIR:T46179PRIDE:Q7Y211PRO:PR:Q7Y211PROSITE:PS51375
ProteinModelPortal:Q7Y211Proteomes:UP000006548RefSeq:NP_191302.2SMR:Q7Y211
STRING:3702.AT3G57430.1SUPFAM:SSF48452TAIR:AT3G57430tair10-symbols:OTP84
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.34834UniProt:Q7Y211
Coordinates (TAIR10) chr3:-:21255731..21258403
Molecular Weight (calculated) 99281.50 Da
IEP (calculated) 7.31
GRAVY (calculated) -0.03
Length 890 amino acids
Sequence (TAIR10)
(BLAST)
001: MSCPLAFTFS LPSIFPFPSQ LLPFSRHKHP YLLRATPTSA TEDVASAVSG APSIFISQSR SPEWWIDLLR SKVRSNLLRE AVLTYVDMIV LGIKPDNYAF
101: PALLKAVADL QDMELGKQIH AHVYKFGYGV DSVTVANTLV NLYRKCGDFG AVYKVFDRIS ERNQVSWNSL ISSLCSFEKW EMALEAFRCM LDENVEPSSF
201: TLVSVVTACS NLPMPEGLMM GKQVHAYGLR KGELNSFIIN TLVAMYGKLG KLASSKVLLG SFGGRDLVTW NTVLSSLCQN EQLLEALEYL REMVLEGVEP
301: DEFTISSVLP ACSHLEMLRT GKELHAYALK NGSLDENSFV GSALVDMYCN CKQVLSGRRV FDGMFDRKIG LWNAMIAGYS QNEHDKEALL LFIGMEESAG
401: LLANSTTMAG VVPACVRSGA FSRKEAIHGF VVKRGLDRDR FVQNTLMDMY SRLGKIDIAM RIFGKMEDRD LVTWNTMITG YVFSEHHEDA LLLLHKMQNL
501: ERKVSKGASR VSLKPNSITL MTILPSCAAL SALAKGKEIH AYAIKNNLAT DVAVGSALVD MYAKCGCLQM SRKVFDQIPQ KNVITWNVII MAYGMHGNGQ
601: EAIDLLRMMM VQGVKPNEVT FISVFAACSH SGMVDEGLRI FYVMKPDYGV EPSSDHYACV VDLLGRAGRI KEAYQLMNMM PRDFNKAGAW SSLLGASRIH
701: NNLEIGEIAA QNLIQLEPNV ASHYVLLANI YSSAGLWDKA TEVRRNMKEQ GVRKEPGCSW IEHGDEVHKF VAGDSSHPQS EKLSGYLETL WERMRKEGYV
801: PDTSCVLHNV EEDEKEILLC GHSEKLAIAF GILNTSPGTI IRVAKNLRVC NDCHLATKFI SKIVDREIIL RDVRRFHRFK NGTCSCGDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)