AT5G63420.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RNA-metabolising metallo-beta-lactamase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
embryo defective 2746 (emb2746); FUNCTIONS IN: hydrolase activity, DNA binding, catalytic activity; INVOLVED IN: metabolic process, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-lactamase-like (InterPro:IPR001279), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G38250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:25400515..25405807 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100559.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.39 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 911 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMKPASLQGF SSHASSSIYS DVRRPATTPS KMAAFSALSL CPYTFTFRQS SRIKSTVSCS VTSAPASGTS SSSKTPRRRS GRLEGVGKSM EDSVKRKMEQ 101: FYEGTDGPPL RILPIGGLGE IGMNCMLVGN YDRYILIDAG IMFPDYDEPG IQKIMPDTGF IRRWKHKIEA VVITHGHEDH IGALPWVIPA LDPNTPIFAS 201: SFTMELIKKR LKEHGIFVQS RLKTFSTRRR FMAGPFEIEP ITVTHSIPDC SGLFLRCADG NILHTGDWKI DEAPLDGKVF DREALEELSK EGVTLMMSDS 301: TNVLSPGRTI SEKVVADALV RNVMAAKGRV ITTQFASNIH RLGSIKAAAD ITGRKLVFVG MSLRTYLEAA WRDGKAPIDP SSLIKVEDIE AYAPKDLLIV 401: TTGSQAEPRA ALNLASYGSS HAFKLTKEDI ILYSAKVIPG NESRVMKMMN RIADIGPNII MGKNEMLHTS GHAYRGELEE VLKIVKPQHF LPIHGELLFL 501: KEHELLGKST GIRHTTVIKN GEMLGVSHLR NRRVLSNGFS SLGRENLQLM YSDGDKAFGT SSELCIDERL RISSDGIIVL SMEIMRPGVS ENTLKGKIRI 601: TTRCMWLDKG RLLDALHKAA HAALSSCPVT CPLSHMERTV SEVLRKIVRK YSGKRPEVIA IATENPMAVR ADEVSARLSG DPSVGSGVAA LRKVVEGNDK 701: RSRAKKAPSQ EASPKEVDRT LEDDIIDSAR LLAEEETAAS TYTEEVDTPV GSSSEESDDF WKSFINPSSS PSPSETENMN KVADTEPKAE GKENSRDDDE 801: LADASDSETK SSPKRVRKNK WKPEEIKKVI RMRGELHSRF QVVKGRMALW EEISSNLSAE GINRSPGQCK SLWASLIQKY EESKADERSK TSWPHFEDMN 901: NILSELGTPA S |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)