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ATCG00170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30865669 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22616989 (2012): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : DNA-directed RNA polymerase family protein
Curator
Summary (TAIR10)
RNA polymerase beta' subunit-2
Computational
Description (TAIR10)
RPOC2; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: RNA elongation; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA polymerase, subunit beta'' (InterPro:IPR012756), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase A1 (TAIR:AT3G57660.1).
Protein Annotations
BioCyc:ARA:ATCG00170-MONOMEREC:2.7.7.6eggNOG:COG0086eggNOG:ENOG410IHM5
eggNOG:ENOG410JR73EMBL:AP000423EnsemblPlants:ATCG00170EnsemblPlants:ATCG00170.1
entrez:844785GeneID:844785Genevisible:P56764GO:GO:0003677
GO:GO:0003899GO:GO:0006351GO:GO:0009507Gramene:ATCG00170.1
HAMAP:MF_01324hmmpanther:PTHR19376hmmpanther:PTHR19376:SF38HOGENOM:HOG000154184
IntAct:P56764InterPro:IPR007066InterPro:IPR007081InterPro:IPR007083
InterPro:IPR012756iPTMnet:P56764KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6
KEGG:ath:ArthCp012KO:K03046MINT:MINT-8360609OMA:DTTMLPG
PaxDb:P56764Pfam:P56764Pfam:PF04983Pfam:PF04998
Pfam:PF05000PRIDE:P56764PRO:PR:P56764ProteinModelPortal:P56764
Proteomes:UP000006548RefSeq:NP_051049.1STRING:3702.ATCG00170.1SUPFAM:SSF64484
TAIR:ATCG00170tair10-symbols:RPOC2TIGRfam:TIGR02388TIGRFAMs:TIGR02388
UniProt:P56764
Coordinates (TAIR10) chrC:-:15938..20068
Molecular Weight (calculated) 156375.00 Da
IEP (calculated) 9.79
GRAVY (calculated) -0.23
Length 1376 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAERANLVFH NKVIDGTAIK RLISRLIDHF GMAYTSHILD QVKTLGFQQA TATSISLGID DLLTIPSKGW LVQDAEQQSW ILEKHHHYGN VHAVEKLRQS
0101: IEIWYATSEY LRQEMNPNFR MTDPFNPVHM MSFSGARGNA SQVHQLVGMR GLMSDPQGQM IDLPIQSNLR EGLSLTEYII SCYGARKGVV DTAVRTSDAG
0201: YLTRRLVEVV QHIVVRRTDC GTIRGISVSP RNKNRMMSER IFIQTLIGRV LADDIYIGSR CVAFRNQDLG IGLVNRLITF GTQSISIRTP FTCRSTSWIC
0301: RLCYGRSPTH GDLVELGEAV GIIAGQSIGE PGTQLTLRTF HTGGVFTGGT AEHVRAPYNG KIKFNEDLVH PTRTRHGHPA FLCYIDLSVI IESEDIIHSV
0401: TIPPKSFLLV QNDQYVESEQ VIAEIREGTY TFHFKERVRK YIYSDSEGEM HWSTDVSHAP EFTYSNVHLL PKTSHLWILS GGSCGSSLIR FSIHKDQDQM
0501: NIPFLSAERK SISSLSVNND QVSQKFFSSD FADPKKLGIY DYSELNGNLG TSHYNLIYSA IFHENSDLLA KRRRNRFLIP FQSIQEQEKE FIPQSGISVE
0601: IPINGIFRRN SIFAFFDDPR YRRKSSGILK YGTLKADSII QKEDMIEYRG VQKIKTKYEM KVDRFFFIPE EVHILPESSA IMVQNYSIIG VDTRLTLNIR
0701: SQVGGLIRVE KKKKRIELKI FSGDIHFPDK TDKISRHSGI LIPPGRGKKN SKESKKFKNW IYVQRITPTK KKFFVLVRPV ATYEIADSIN LATLFPQDLF
0801: REKDNIQLRV FNYILYGNGK PTRGISDTSI QLVRTCLVLN WDKNSSLEEV RAFFVEVSTK GLIQDFIRIG LVKSHISYIR KRNNSPDSGL ISADHMNPFY
0901: SISPKSGILQ QSLRQNHGTI RMFLNRNKES QSLLILSSSN CFRMGPFNHV KHHNVINQSI KKNTLITIKN SSGPLGTATP ISNFYSFLPL LTYNQISLIK
1001: YFQLDNLKYI FQKINSYLID ENGIILNLDP YSNVVLNPFK LNWYFLHQNY HHNYCEETST IISLGQFFCE NVCIAKKEPH LKSGQVLIVQ RDSAVIRSAK
1101: PYLATPGAKV HGHYSEILYE GDTLVTFIYE KSRSGDITQG LPKVEQVLEV RSIDSISLNL EKRIKGWNKC ITRILGIPWG FLIGAELTIV QSRISLVNKI
1201: QKVYRSQGVQ IHNRHIEIIV RQITSKVLVS EEGMSNVFLP GELIGLLRAE RTGRALEEAI CYRAVLLGIT RASLNTQSFI SEASFQETAR VLAKAALRGR
1301: IDWLKGLKEN VVLGGVIPAG TGFNKGLVHC SRQHTNIILE KKTKNLALFE GDMRDILFYH REFCDSSISK SDFSRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)