AT4G18520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G39530.1); Has 48062 Blast hits to 12645 proteins in 202 species: Archae - 0; Bacteria - 8; Metazoa - 107; Fungi - 40; Plants - 47280; Viruses - 0; Other Eukaryotes - 627 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10215250..10217103 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69278.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.40 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 617 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFSLSLIQPR LRISEIPVTQ SYKSPTICYS SDSRTKREEQ RHVRLPGFRL VSGKRASFDS GFSGFKGENV NQDDSSSFDS ERVDYALLAE WLQSSNGMRL 101: IKRIHAMALK CFDDQVIYFG NNLISSCVRL GDLVYARKVF DSMPEKNTVT WTAMIDGYLK YGLEDEAFAL FEDYVKHGIR FTNERMFVCL LNLCSRRAEF 201: ELGRQVHGNM VKVGVGNLIV ESSLVYFYAQ CGELTSALRA FDMMEEKDVI SWTAVISACS RKGHGIKAIG MFIGMLNHWF LPNEFTVCSI LKACSEEKAL 301: RFGRQVHSLV VKRMIKTDVF VGTSLMDMYA KCGEISDCRK VFDGMSNRNT VTWTSIIAAH AREGFGEEAI SLFRIMKRRH LIANNLTVVS ILRACGSVGA 401: LLLGKELHAQ IIKNSIEKNV YIGSTLVWLY CKCGESRDAF NVLQQLPSRD VVSWTAMISG CSSLGHESEA LDFLKEMIQE GVEPNPFTYS SALKACANSE 501: SLLIGRSIHS IAKKNHALSN VFVGSALIHM YAKCGFVSEA FRVFDSMPEK NLVSWKAMIM GYARNGFCRE ALKLMYRMEA EGFEVDDYIF ATILSTCGDI 601: ELDEAVESSA TCYLETS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)