suba logo
AT4G18530.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.609
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF707)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT4G12840.2); Has 310 Blast hits to 308 proteins in 22 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFA9eggNOG:ENOG4111YFTEMBL:CP002687EnsemblPlants:AT4G18530
EnsemblPlants:AT4G18530.1entrez:827585GeneID:827585GO:GO:0016757
Gramene:AT4G18530.1hmmpanther:PTHR31210hmmpanther:PTHR31210:SF4InParanoid:F4JRK4
InterPro:IPR007877iPTMnet:F4JRK4KEGG:ath:AT4G18530OMA:DICENKC
PaxDb:F4JRK4Pfam:PF05212PRIDE:F4JRK4Proteomes:UP000006548
RefSeq:NP_193588.5TAIR:AT4G18530TMHMM:TMhelixUniGene:At.22134
UniProt:F4JRK4
Coordinates (TAIR10) chr4:+:10217749..10220285
Molecular Weight (calculated) 45179.10 Da
IEP (calculated) 8.77
GRAVY (calculated) -0.57
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQGSMNRSC LCSVLITTAL ICGAYFICNA YLAKDFKEKL LKWEITDKMH NSTDKMQNAT TTSTCKNFNK PVGTEALPQG IIEKTSNLET QHLWNYDDTK
101: KRRPNHSMSL LAMAVGIKQK ELVNKVIQKF PPRDFAVMLF HYDGVVDDWK QYPWNNHAIH VSVMNQTKWW FAKRFLHPDI VAEYEYIFLW DEDLGVGHFN
201: PQRYLSIVKE EGLEISQPAL DTSKSEVHHP ITARRKKSKV HRRMYKYKGS GRCDDHSTNP PCIGWVEMMA PVFSRAAWRC SWYMIQNDLI HAWGLDTQLG
301: YCAQGDRKKN VGVVDAEYII HYGLPTLGVV ETASSALRNE TDSKSTESLE SREVDNRPEV RMKSFVEMKR FKERWKKAVR DDTCWVDPY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)