suba logo
AT1G18470.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.956
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transmembrane Fragile-X-F-associated protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transmembrane Fragile-X-F-associated protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane Fragile-X-F-associated protein (InterPro:IPR019396), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1); Has 2617 Blast hits to 2612 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 1517; Fungi - 24; Plants - 500; Viruses - 234; Other Eukaryotes - 342 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IRWVeggNOG:ENOG410XSFHEMBL:AY087249EMBL:BT030383
EMBL:CP002684EnsemblPlants:AT1G18470EnsemblPlants:AT1G18470.1entrez:838427
ExpressionAtlas:Q8LBF1Gene3D:3.30.40.10GeneID:838427GO:GO:0008270
GO:GO:0016021Gramene:AT1G18470.1hmmpanther:PTHR10044HOGENOM:HOG000005785
InterPro:IPR001841InterPro:IPR013083InterPro:IPR019396KEGG:ath:AT1G18470
OMA:FAFLHRGPfam:PF10269Pfam:PF13920Pfscan:PS50089
PhylomeDB:Q8LBF1PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_564052.1
SMART:SM00184SMR:Q8LBF1SUPFAM:SSF57850TAIR:AT1G18470
TMHMM:TMhelixUniGene:At.27535UniGene:At.41793UniProt:Q8LBF1
Coordinates (TAIR10) chr1:-:6356407..6360057
Molecular Weight (calculated) 53003.80 Da
IEP (calculated) 6.98
GRAVY (calculated) 0.26
Length 467 amino acids
Sequence (TAIR10)
(BLAST)
001: MSCRRVLKSI QALAAHSLLF CFTLLLVLKL DHTVSSSWWM VFFPLWAFHA VVARGRFSLP APVAPRNRHW APCHAVVATP LLVAFELLLC IYLESSYARW
101: PPAVSLKIAF LPLLAFELTI LVDNLRMCRA LMPGDDDSIT DDAIWEALPH FWVAISMVFT LAATFFTLLK LSGDVVALGW WDLFINFGIA ECFAFLVCTK
201: WSNPVIHRSS RARETGSSST SIRYLDWNSG LVVAPEEDRH QDRWCGLQDI GGHMLKIPVI LFQVVLCMYL EGTPERAKDI SIPVLFSPLF LLQGLGVLFA
301: ASKLLEKIVL LLRGEAGPGL YFRFSSSAHD CLGFLHHGSR LLGWWSIDEG SREEQARLYF DQESGYNTFS GHPPEIVKKM PKEDLAEEVW RLQAALGEQT
401: EITKFSQQEY ERLQNEKVLC RVCFEKDISL VLLPCRHRVL CRTCADKCTT CPICRIDIEK RLSVYDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)