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AT1G68820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.525
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transmembrane Fragile-X-F-associated protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transmembrane Fragile-X-F-associated protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane Fragile-X-F-associated protein (InterPro:IPR019396), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1); Has 2761 Blast hits to 2715 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 1602; Fungi - 4; Plants - 542; Viruses - 213; Other Eukaryotes - 400 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111S1XeggNOG:KOG1100EMBL:AF370299EMBL:AY063085
EMBL:CP002684EnsemblPlants:AT1G68820EnsemblPlants:AT1G68820.1entrez:843214
Gene3D:3.30.40.10GeneID:843214GO:GO:0008270GO:GO:0016021
Gramene:AT1G68820.1hmmpanther:PTHR10044hmmpanther:PTHR10044:SF122HOGENOM:HOG000005785
InterPro:IPR001841InterPro:IPR013083InterPro:IPR019396KEGG:ath:AT1G68820
OMA:MPHDRHWPfam:PF10269Pfam:PF13920Pfscan:PS50089
PhylomeDB:Q94K50PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_564945.1
SMR:Q94K50STRING:3702.AT1G68820.1SUPFAM:SSF57850TAIR:AT1G68820
TMHMM:TMhelixUniGene:At.17970UniProt:Q94K50
Coordinates (TAIR10) chr1:+:25865852..25868800
Molecular Weight (calculated) 53639.60 Da
IEP (calculated) 6.92
GRAVY (calculated) 0.26
Length 468 amino acids
Sequence (TAIR10)
(BLAST)
001: MLVQRRVMSW RRVWKSFQAA SAHCLLFSFT LLLALKLDHV VSHSWWFVFA PLWLFHAVIA RGRFSLPAPS MPHDRHWAPF HSVMATPLLV AFEILLCVHL
101: EDKYVVDLKI VFLPLLAFEV AILIDNVRMC RTLMPGDEET MSDEAIWETL PHFWVSISMV FFIAATTFTL LKLCGDVAAL GWWDLFINFG IAECFAFLVC
201: TKWSNQSIHR YSHIPEPSSS SMVVRYLDWN RGLVVTADDE HQQSNRICGL QDIGGHVMKI PFVTFQIILF MRLEGTPASA KNIPILVLFV PLFLLQGAGV
301: LFAMYRLVEK SVLLINSGSG SYGRYFTATS SAREFLGFFQ HGARLLGWWS IDEGSREEQA RLYSGEATGY NTFSPEVVKK MPKSDLVEEI WRLQAALSEQ
401: TDITSYSQQE YERLQNEKIL CRVCFEDPIN VVLLPCRHHV LCSTCCEKCK KCPICRVLIE ERMPVYDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)