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AT3G55890.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.974
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Yippee family putative zinc-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT2G40110.1); Has 985 Blast hits to 985 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 467; Fungi - 205; Plants - 238; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
DNASU:824755eggNOG:ENOG4111VJ1eggNOG:KOG3399EMBL:AL163832
EMBL:AY050951EMBL:AY091443EMBL:CP002686EnsemblPlants:AT3G55890
EnsemblPlants:AT3G55890.1entrez:824755ExpressionAtlas:Q9LY56GeneID:824755
Genevisible:Q9LY56GO:GO:0046872Gramene:AT3G55890.1hmmpanther:PTHR13848
HOGENOM:HOG000184254InParanoid:Q9LY56InterPro:IPR004910iPTMnet:Q9LY56
KEGG:ath:AT3G55890OMA:PHDSNDLPaxDb:Q9LY56Pfam:PF03226
Pfam:Q9LY56PhylomeDB:Q9LY56PIR:T49201PRO:PR:Q9LY56
PROSITE:PS51792ProteinModelPortal:Q9LY56Proteomes:UP000006548RefSeq:NP_191148.1
SMR:Q9LY56STRING:3702.AT3G55890.1TAIR:AT3G55890UniGene:At.5201
UniProt:Q0WPD7UniProt:Q9LY56
Coordinates (TAIR10) chr3:+:20740908..20741868
Molecular Weight (calculated) 13593.20 Da
IEP (calculated) 6.09
GRAVY (calculated) -0.34
Length 121 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRVFMVDLE GNIYICKLCK THLSTDQDIM SKSFQCKNGR AYLFNNVVNV SVGEKEDRMM ITGLHNVVDI FCVGCGSNVG WKYEFAHEKS QKYKEGKSVL
101: ELYKISGPHD SNDLVSDGDD A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)