AT1G48260.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.982 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : CBL-interacting protein kinase 17 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
CBL-interacting protein kinase 17 (CIPK17); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 1 (TAIR:AT3G17510.1); Has 126535 Blast hits to 124591 proteins in 3565 species: Archae - 145; Bacteria - 14911; Metazoa - 46222; Fungi - 12574; Plants - 31282; Viruses - 516; Other Eukaryotes - 20885 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:17814226..17817226 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 48665.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 432 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVIKGMRVGK YELGRTLGEG NSAKVKFAID TLTGESFAIK IIEKSCITRL NVSFQIKREI RTLKVLKHPN IVRLHEVLAS KTKIYMVLEC VTGGDLFDRI 101: VSKGKLSETQ GRKMFQQLID GVSYCHNKGV FHRDLKLENV LLDAKGHIKI TDFGLSALSQ HYREDGLLHT TCGSPNYVAP EVLANEGYDG AASDIWSCGV 201: ILYVILTGCL PFDDANLAVI CRKIFKGDPP IPRWISLGAK TMIKRMLDPN PVTRVTIAGI KAHDWFKHDY TPSNYDDDDD VYLIQEDVFM MKEYEEEKSP 301: DSPTIINAFQ LIGMSSFLDL SGFFETEKLS ERQIRFTSNS LAKDLLENIE TIFTEMGFCL QKKHAKLKAI KEESTQKRQC GLSVTAEVFE ISPSLNVVEL 401: RKSHGDSSLY KQLYERLLNE LGSSSQVQEL LA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)