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AT2G46030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.986
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-conjugating enzyme 6
Curator
Summary (TAIR10)
Ubiquitin conjugating enzyme E2
Computational
Description (TAIR10)
ubiquitin-conjugating enzyme 6 (UBC6); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Ubiquitin-conjugating enzyme (InterPro:IPR015581); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 5 (TAIR:AT1G63800.1); Has 8701 Blast hits to 8700 proteins in 389 species: Archae - 0; Bacteria - 2; Metazoa - 3940; Fungi - 1759; Plants - 1590; Viruses - 20; Other Eukaryotes - 1390 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G46030-MONOMERBioGrid:4546EC:2.3.2.23eggNOG:ENOG410XRC5
eggNOG:KOG0416EMBL:AC005397EMBL:AK228245EMBL:BT005208
EMBL:CP002685EMBL:DQ027021EMBL:L19355EMBL:X71381
EnsemblPlants:AT2G46030EnsemblPlants:AT2G46030.1entrez:819211Gene3D:3.10.110.10
GeneID:819211Genevisible:P42750GO:GO:0004842GO:GO:0005524
GO:GO:0005737GO:GO:0006511GO:GO:0031625GO:GO:0061630
Gramene:AT2G46030.1hmmpanther:PTHR24067hmmpanther:PTHR24067:SF156HOGENOM:HOG000233452
InParanoid:P42750InterPro:IPR000608InterPro:IPR016135InterPro:IPR023313
KEGG:ath:AT2G46030KO:K10576OMA:INVFESFPaxDb:P42750
Pfam:P42750Pfam:PF00179Pfscan:PS50127PhylomeDB:P42750
PIR:S43785PIR:S52661PRIDE:P42750PRO:PR:P42750
PROSITE:PS00183PROSITE:PS50127ProteinModelPortal:P42750Proteomes:UP000006548
RefSeq:NP_566062.1scanprosite:PS00183SMR:P42750STRING:3702.AT2G46030.1
SUPFAM:SSF54495TAIR:AT2G46030tair10-symbols:UBC6UniGene:At.48598
UniGene:At.68190UniPathway:UPA00143UniProt:P42750
Coordinates (TAIR10) chr2:-:18932243..18933421
Molecular Weight (calculated) 20786.10 Da
IEP (calculated) 3.91
GRAVY (calculated) -0.58
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MASPSKRREM DMMKLMMSDY KVDTVNDDLQ MFYVTFHGPT DSLYQGGVWK IKVELPEAYP YKSPSVGFVN KIYHPNVDES SGAVCLDVIN QTWSPMFDLI
101: NVFESFLPQL LLYPNPSDPF NGEAASLLMR DRAAYELKVK EYCEKYAKPE EILSDDDDDD SMSEDGSDSD DDDDDEIVGK ADP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)