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AT3G03950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : evolutionarily conserved C-terminal region 1
Curator
Summary (TAIR10)
Physically interacts with CIPK1. Located in the nucleus.
Computational
Description (TAIR10)
evolutionarily conserved C-terminal region 1 (ECT1); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 3 (TAIR:AT5G61020.1); Has 965 Blast hits to 955 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 418; Fungi - 123; Plants - 338; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YABQeggNOG:KOG1901EMBL:CP002686EnsemblPlants:AT3G03950
EnsemblPlants:AT3G03950.1entrez:819550ExpressionAtlas:F4J2E9GeneID:819550
GO:GO:0003723Gramene:AT3G03950.1hmmpanther:PTHR12357hmmpanther:PTHR12357:SF31
InterPro:IPR007275PaxDb:F4J2E9Pfam:PF04146Pfscan:PS50882
PhylomeDB:F4J2E9PRIDE:F4J2E9PROSITE:PS50882ProteinModelPortal:F4J2E9
Proteomes:UP000006548RefSeq:NP_566218.1SMR:F4J2E9STRING:3702.AT3G03950.3
TAIR:AT3G03950tair10-symbols:ECT1UniGene:At.27388UniProt:F4J2E9
Coordinates (TAIR10) chr3:+:1021502..1023767
Molecular Weight (calculated) 47946.80 Da
IEP (calculated) 7.42
GRAVY (calculated) -0.70
Length 425 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGAASSDRL VTSFPLLDLF QDLSLGSDAN EVPMNFTKGS FQHPYGHAPY GASSHGSERR PNMNAGNLLN GGDSIGSYPW GYIPANYPSG GYPDPRFGYD
101: RNSNHSSFSH LMNPHSSQEV PSFDQLGYND HLYSNHGLYG LYGNVIDSGH AYGTFGYDSW KLGRGWYPVD GYRKTRSFNH GRGYSDEKAD RLNELCRGPR
201: SSDFKNPQVL NSSMLDAMKQ DVSAVDLQRY NGENFPESFV KAKFFVIKSY SEDDVHNCIK YGAWSSTPTG NKKLNAAYYE AKENSQECPV YLLFSVNASG
301: QFVGLAEMVG PVDFNKTMEY WQQDKWIGCF PVKWHIIKDI PNSLLRHITL ANNENKPVTN SRDTQEVNLE HGTKIIKIFK EYMSKTCILD DYKFYETRQK
401: IIRDKKIKQK KQALDGASGE TINLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)