AT5G17270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.985 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein prenylyltransferase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Protein prenylyltransferase superfamily protein (TAIR:AT5G37130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:5679995..5685597 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101009.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.05 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||
| Length | 899 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVDGEVEILR GYELRLLRCT VSFPQTGSPL ESQPLDGTQS GTHPHDSLIT SLLSSIEAGD YLGALSSDAT KLILGDSELN LVDTVDSAEQ VYSELLDKVE 101: SFVVNDSSDE IDKARRAVLV MCLAIATALW FTRCNLTGST EGSTKCSLPL RVSESKELVE WENWAKIQLM SVGSDLLGKF SNLQHLVFAR LLLFKLKDLL 201: FEITSTETFE VRSISWWLVR VLLIHQRVLQ ERSSSLFEML QVYMAEAIDH FGELEKVKSY WGANLLEDEA SSITSTIHLE ACVLQYIYGR IDPSRLQLES 301: AKAAASLEFS VTGALGFRTI HQVDPKAQMV LVANTSSSNG DVRLASEKAD VGPYEAWGGE APEVYMTPKL VNNESEAGKD SVPLKPVEQA LILAQCLLIE 401: RGSRHDEMQR WDMAPYIEAI DSQKSTYFVL RCFCDLLRVR WESTRGRTKG RALEMMDKLV GAINKSDPGV SNRIPLCYAV HLPTIPALRK EYGELLVSCG 501: LVGEAITIFE SLELWDNLIY CYCLLGKKSA AVDLINARLL ERPNDPRLWC SLGDVTINDS CYEKALEVSN DKSVRAKRAL ARSAYNRGDF EKSKMLWEAA 601: MALNSLYPDG WFALGAAALK ARDVQKALDA FTFAVQLDPD NGEAWNNIAC LHMIKKKSKE SFIAFKEALK FKRDSWQMWE NFSHVAMDVG NIDQAFEAIQ 701: QILKMSKNKR VDVVLLDRIM TELEKRNSAC KSSSSSTETE ASSDESTETK PCTATPAETQ RQLELLGKVI QQIVKTESTA EIWGLYARWS RIKGDLTVCS 801: EALLKQVRSY QGSEVWKDKE RFKKFARASL ELCRVYMEIS ASIGSKRELF TAEMHLKNTI KQATVSFLDS EELKELESCL EEVRNVMQKS EEEYRDTKT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)