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AT4G32520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine hydroxymethyltransferase 3
Curator
Summary (TAIR10)
Encodes a serine hydroxymethyltransferase SHMT3 located in the plastid.
Computational
Description (TAIR10)
serine hydroxymethyltransferase 3 (SHM3); FUNCTIONS IN: glycine hydroxymethyltransferase activity; INVOLVED IN: glycine metabolic process, L-serine metabolic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine transhydroxymethyltransferase 1 (TAIR:AT4G37930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G32520-MONOMERBioCyc:ARA:GQT-2268-MONOMERBioGrid:14673BRENDA:2.1.2.1
EC:2.1.2.1eggNOG:COG0112eggNOG:KOG2467EMBL:AF375450
EMBL:AL034567EMBL:AL161581EMBL:BT000641EMBL:CP002687
EnsemblPlants:AT4G32520EnsemblPlants:AT4G32520.1EnsemblPlants:AT4G32520.2entrez:829387
Gene3D:3.40.640.10Gene3D:3.90.1150.10GeneID:829387Genevisible:Q94JQ3
GO:GO:0004372GO:GO:0006544GO:GO:0006563GO:GO:0009507
GO:GO:0030170GO:GO:0035999Gramene:AT4G32520.1Gramene:AT4G32520.2
gramene_pathway:2.1.2.1gramene_pathway:GLYSYN2-PWYgramene_pathway:PWY-181gramene_pathway:PWY-2161
gramene_pathway:PWY-2201gramene_pathway:PWY-3841HAMAP:MF_00051hmmpanther:PTHR11680
HOGENOM:HOG000239405InParanoid:Q94JQ3IntAct:Q94JQ3InterPro:IPR001085
InterPro:IPR015421InterPro:IPR015422InterPro:IPR015424InterPro:IPR019798
iPTMnet:Q94JQ3KEGG:00260+2.1.2.1KEGG:00460+2.1.2.1KEGG:00630+2.1.2.1
KEGG:00670+2.1.2.1KEGG:00680+2.1.2.1KEGG:ath:AT4G32520KO:K00600
OMA:MQACCGGPANTHER:PTHR11680PaxDb:Q94JQ3Pfam:PF00464
Pfam:Q94JQ3PIR:T05362PIRSF:PIRSF000412PRIDE:Q94JQ3
PRO:PR:Q94JQ3PROSITE:PS00096ProteinModelPortal:Q94JQ3Proteomes:UP000006548
Reactome:R-ATH-196757Reactome:R-ATH-71262RefSeq:NP_001119098.1RefSeq:NP_567895.1
scanprosite:PS00096SMR:Q94JQ3STRING:3702.AT4G32520.1SUPFAM:SSF53383
TAIR:AT4G32520tair10-symbols:AtSHMT3tair10-symbols:SHM3UniGene:At.27717
UniPathway:UPA00193unipathway:UPA00288UniProt:Q94JQ3
Coordinates (TAIR10) chr4:-:15689642..15692334
Molecular Weight (calculated) 57986.10 Da
IEP (calculated) 9.22
GRAVY (calculated) -0.18
Length 529 amino acids
Sequence (TAIR10)
(BLAST)
001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)