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AT4G39520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GTP-binding protein-related
Curator
Summary (TAIR10)
Encodes a member of the DRG (developmentally regulated G-protein) family. Has GTPase activity.
Computational
Description (TAIR10)
GTP-binding protein-related; FUNCTIONS IN: GDP binding, GTP binding, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), TGS (InterPro:IPR004095), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: developmentally regulated G-protein 1 (TAIR:AT1G17470.2); Has 19252 Blast hits to 19228 proteins in 2957 species: Archae - 773; Bacteria - 12312; Metazoa - 831; Fungi - 661; Plants - 370; Viruses - 0; Other Eukaryotes - 4305 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1163eggNOG:KOG1487EMBL:AL078620EMBL:AL161595
EMBL:AY035034EMBL:CP002687EnsemblPlants:AT4G39520EnsemblPlants:AT4G39520.1
entrez:830106Gene3D:3.40.50.300GeneID:830106Genevisible:Q9SVA6
GO:GO:0003924GO:GO:0005525GO:GO:0005829GO:GO:0019003
Gramene:AT4G39520.1hmmpanther:PTHR11702hmmpanther:PTHR11702:SF26HOGENOM:HOG000112078
InParanoid:Q9SVA6InterPro:IPR004095InterPro:IPR005225InterPro:IPR006073
InterPro:IPR006074InterPro:IPR012676InterPro:IPR027417InterPro:IPR031167
InterPro:IPR031662KEGG:ath:AT4G39520ncoils:CoilOMA:KATSFHL
PaxDb:Q9SVA6Pfam:PF01926Pfam:PF02824Pfam:PF16897
Pfam:Q9SVA6Pfscan:PS51710PhylomeDB:Q9SVA6PIR:T09368
PRIDE:Q9SVA6PRINTS:PR00326PRO:PR:Q9SVA6PROSITE:PS00905
PROSITE:PS51710ProteinModelPortal:Q9SVA6Proteomes:UP000006548RefSeq:NP_195662.1
scanprosite:PS00905SMR:Q9SVA6STRING:3702.AT4G39520.1SUPFAM:SSF52540
SUPFAM:SSF81271TAIR:AT4G39520TIGRfam:TIGR00231TIGRFAMs:TIGR00231
UniGene:At.3445UniProt:Q9SVA6
Coordinates (TAIR10) chr4:-:18371329..18374000
Molecular Weight (calculated) 41146.10 Da
IEP (calculated) 8.62
GRAVY (calculated) -0.27
Length 369 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTIMQKIKE IEDEMAKTQK NKATSHHLGL LKAKLAKLRR DLLAPPTKGG GGGAGEGFDV TKSGDSRVGL VGFPSVGKST LLNKLTGTFS EVASYEFTTL
101: TCIPGVITYR GAKIQLLDLP GIIEGAKDGK GRGRQVISTA RTCNCILIVL DAIKPITHKR LIEKELEGFG IRLNKEPPNL TFRKKDKGGI NLTSTVAVTH
201: LDLDTVKAIC GEYRMHNADI TLRYDATADD LIDVIEGSRI YMPCIYAVNK IDSITLEELE ILDKLPHYCP VSAHLEWNLD GLLDKIWEYL DLTRIYTKPK
301: AMNPDYDDPV ILSSKKRTVE DFCIRIHKDM LKQFKYALVW GSSAKHKPQR VGKEHELEDE DVVQIVKKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)