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AT1G72550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tRNA synthetase beta subunit family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tRNA synthetase beta subunit family protein; FUNCTIONS IN: phenylalanine-tRNA ligase activity, RNA binding, magnesium ion binding, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, translation; LOCATED IN: phenylalanine-tRNA ligase complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Putative DNA binding domain (InterPro:IPR009061), tRNA synthetase, B5 (InterPro:IPR005147), Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic (InterPro:IPR004531), B3/B4 tRNA-binding domain (InterPro:IPR005146); Has 6477 Blast hits to 6464 proteins in 2647 species: Archae - 257; Bacteria - 4445; Metazoa - 257; Fungi - 153; Plants - 56; Viruses - 0; Other Eukaryotes - 1309 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G72550-MONOMERBioCyc:ARA:GQT-855-MONOMERBioGrid:28806EC:6.1.1.20
eggNOG:COG0072eggNOG:KOG2472EMBL:AC010926EMBL:AY062707
EMBL:AY128795EMBL:CP002684EnsemblPlants:AT1G72550EnsemblPlants:AT1G72550.1
entrez:843587ExpressionAtlas:Q9SGE9Gene3D:3.30.56.20GeneID:843587
Genevisible:Q9SGE9GO:GO:0000287GO:GO:0003723GO:GO:0004826
GO:GO:0005524GO:GO:0005829GO:GO:0006432gramene_pathway:6.1.1.20
gramene_pathway:TRNA-CHARGING-PWYhmmpanther:PTHR10947HOGENOM:HOG000105095InParanoid:Q9SGE9
InterPro:IPR004531InterPro:IPR005146InterPro:IPR005147InterPro:IPR009061
InterPro:IPR020825KEGG:ath:AT1G72550KO:K01890MINT:MINT-8068273
OMA:LHQNICXPaxDb:Q9SGE9Pfam:PF03483Pfam:PF03484
Pfam:Q9SGE9Pfscan:PS51483PhylomeDB:Q9SGE9PIR:H96749
PRIDE:Q9SGE9PRO:PR:Q9SGE9PROSITE:PS51483ProteinModelPortal:Q9SGE9
Proteomes:UP000006548RefSeq:NP_177399.1SMART:SM00873SMART:SM00874
SMR:Q9SGE9STRING:3702.AT1G72550.1SUPFAM:SSF46955SUPFAM:SSF55681
SUPFAM:SSF56037TAIR:AT1G72550TIGRfam:TIGR00471TIGRFAMs:TIGR00471
UniGene:At.27258UniProt:Q9SGE9
Coordinates (TAIR10) chr1:-:27319947..27323908
Molecular Weight (calculated) 67546.60 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.09
Length 598 amino acids
Sequence (TAIR10)
(BLAST)
001: MPTISVGRDR LFAALGESYT QEKFEELCFS FGIELDDVTT EKAIIRKEKH IDEEADDDEE IIYKIEIPAN RPDLLCLEGL AQSLRVFIEK QEIPTYTLAD
101: ISKDKILQMN VKPETSKIRP FVVCAVLRGV TFDEARYNSF IDLQDKLHQN ICRRRSLVAI GTHDLDTLQG PFTYEALPPT DINFVPLKQT KSFRADELIE
201: FYKSDMKLKK FLHIIENSPV FPVLYDSKRT VLSLPPIING AHSAITLQTK NVFIECTATD LTKAKIVLNT MVTTFSEFCA RKFEIEPVEV TYDDGKSYIY
301: PDLAVYDMEV PLSFITDSIG VSLKVEQVTS LLTRMQLQAE QAKSSDNQCA IKVHVPPSRS DVLHPCDVME DVAIAYGFNN IPTRKPASIK PLTLNELTDL
401: LRIEIAMCVY TEVVTWLLCS HKENFAMLNR EDVNSAVIVG NPRSADFEAM RRALMPGLLK TVGHNNKYPK PIKIFEISDV VMLDESKDVG ASNRRHLAAL
501: YCGATSGFEL IHGLVDRIME VMAIPFLTIH ENNVPINEKD GYYVKLSQEP EFLPGRQASI IVRGKHIGNF GIVHPEVLNN FDIPDPCSYL ELDIEAIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)