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AT3G02530.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TCP-1/cpn60 chaperonin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to cadmium ion, response to zinc ion; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, zeta subunit (InterPro:IPR012722), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT5G16070.1); Has 18475 Blast hits to 17833 proteins in 3650 species: Archae - 805; Bacteria - 8777; Metazoa - 2106; Fungi - 1471; Plants - 861; Viruses - 0; Other Eukaryotes - 4455 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ3QeggNOG:KOG0359EMBL:AC021640EMBL:AF387003
EMBL:AY062729EMBL:AY084739EMBL:AY114652EMBL:BT001156
EMBL:CP002686EnsemblPlants:AT3G02530EnsemblPlants:AT3G02530.1entrez:821160
Gene3D:1.10.560.10Gene3D:3.30.260.10Gene3D:3.50.7.10GeneID:821160
Genevisible:Q9M888GO:GO:0005524GO:GO:0005737GO:GO:0005829
GO:GO:0006457GO:GO:0010043GO:GO:0016020GO:GO:0046686
Gramene:AT3G02530.1hmmpanther:PTHR11353hmmpanther:PTHR11353:SF21HOGENOM:HOG000226733
InParanoid:Q9M888InterPro:IPR002194InterPro:IPR002423InterPro:IPR012722
InterPro:IPR017998InterPro:IPR027409InterPro:IPR027410InterPro:IPR027413
KEGG:ath:AT3G02530KO:K09498OMA:EAGVWDNPANTHER:PTHR11353:SF21
PaxDb:Q9M888Pfam:PF00118Pfam:Q9M888PhylomeDB:Q9M888
PRIDE:Q9M888PRINTS:PR00304PRO:PR:Q9M888PROSITE:PS00750
PROSITE:PS00751ProteinModelPortal:Q9M888Proteomes:UP000006548Reactome:R-ATH-390471
RefSeq:NP_186902.1scanprosite:PS00750scanprosite:PS00751SMR:Q9M888
STRING:3702.AT3G02530.1SUPFAM:SSF48592SUPFAM:SSF52029SUPFAM:SSF54849
TAIR:AT3G02530TIGRfam:TIGR02347TIGRFAMs:TIGR02347UniGene:At.20380
UniGene:At.67357UniProt:Q9M888
Coordinates (TAIR10) chr3:-:528806..532457
Molecular Weight (calculated) 58953.50 Da
IEP (calculated) 6.12
GRAVY (calculated) -0.17
Length 535 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVRVLNPNA EVLNKSAALH MTINAAKGLQ DVLKSNLGPK GTIKMLVGGS GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDISGDG TTSTVIFIGE
101: LMKQSERCID EGMHPRVLVD GFEIAKRATL QFLDTFKTPV VMGDEPDKEI LKMVARTTLR TKLYEGLADQ LTDIVVNSVL CIRKPQEPID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CHILTCNVSL EYEKSEINAG FFYSNAEQRE AMVTAERRSV DERVQKIIEL KNKVCAGNDN SFVILNQKGI
301: DPPSLDLLAR EGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTPDCLGWA GLVYEHVLGE EKYTFVEQVK NPHSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTLEDECV VLGAGAFEVA ARQHLINEVK KTVQGRAQLG VEAFANALLV VPKTLAENAG LDTQDVIISL TSEHDKGNIV GLDLQDGEPV DPQLAGIFDN
501: YSVKRQLINS GPVIASQLLL VDEVIRAGRN MRKPT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)