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AT1G77000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
AtSKP2;2 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. AtSKP2b may also be involved in the degradation of KRP1/ICK1, a CDK inhibitor.
Computational
Description (TAIR10)
SKP2B; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G21410.1); Has 9510 Blast hits to 4016 proteins in 276 species: Archae - 0; Bacteria - 549; Metazoa - 3688; Fungi - 1101; Plants - 3231; Viruses - 6; Other Eukaryotes - 935 (source: NCBI BLink).
Protein Annotations
BioGrid:29255eggNOG:ENOG410IT1SeggNOG:ENOG41103D0EMBL:AC002291
EMBL:AK117866EMBL:AK175607EMBL:AK175925EMBL:AY087441
EMBL:BT024747EMBL:CP002684EnsemblPlants:AT1G77000EnsemblPlants:AT1G77000.1
EnsemblPlants:AT1G77000.2entrez:844036Gene3D:3.80.10.10GeneID:844036
Genevisible:O49286GO:GO:0010286GO:GO:0051603GO:GO:1901332
Gramene:AT1G77000.1Gramene:AT1G77000.2hmmpanther:PTHR24006HOGENOM:HOG000238537
InParanoid:O49286InterPro:IPR001611InterPro:IPR001810InterPro:IPR006553
InterPro:IPR032675KEGG:ath:AT1G77000KO:K03875OMA:MSACHIS
PaxDb:O49286Pfam:O49286Pfam:PF00646Pfam:PF13516
PhylomeDB:O49286PIR:A96799PRIDE:O49286PRO:PR:O49286
ProteinModelPortal:O49286Proteomes:UP000006548RefSeq:NP_001185415.1RefSeq:NP_565147.1
SMART:SM00367SMR:O49286STRING:3702.AT1G77000.1SUPFAM:SSF52047
SUPFAM:SSF81383TAIR:AT1G77000tair10-symbols:ATSKP2;2tair10-symbols:SKP2B
UniGene:At.28008UniProt:O49286
Coordinates (TAIR10) chr1:+:28940888..28942401
Molecular Weight (calculated) 39911.50 Da
IEP (calculated) 7.50
GRAVY (calculated) 0.01
Length 360 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSEGATRKE LNLCFENMKM EGVLISEWKD IPVELLMKIL NLVDDRTVII ASCICSGWRD AVSLGLTRLS LSWCKKNMNS LVLSLAPKFV KLQTLVLRQD
101: KPQLEDNAVE AIANHCHELQ DLDLSKSSKI TDHSLYSLAR GCTNLTKLNL SGCTSFSDTA LAHLTRFCRK LKILNLCGCV EAVSDNTLQA IGENCNQLQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC SCVLITDESV VALANRCIHL RSLGLYYCRN ITDRAMYSLA QSGVKNKHEM WRAVKKGKFD EEGLRSLNIS
301: QCTYLTPSAV QAVCDTFPAL HTCSGRHSLV MSGCLNLQSV HCACILQAHR THTVYPHPAH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)