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AT4G06676.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.662
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Etoposide-induced 2.4 (InterPro:IPR009890); Has 264 Blast hits to 262 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 16; Plants - 79; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRPUeggNOG:KOG3966EMBL:AB073164EMBL:AY735638
EMBL:AY924813EMBL:CP002687EnsemblPlants:AT4G06676EnsemblPlants:AT4G06676.1
entrez:826112ExpressionAtlas:Q5BPL5GeneID:826112GO:GO:0016021
hmmpanther:PTHR21389hmmpanther:PTHR21389:SF0HOGENOM:HOG000006279InParanoid:Q5BPL5
InterPro:IPR009890OMA:REACCLHPANTHER:PTHR21389PaxDb:Q5BPL5
Pfam:PF07264Pfam:Q5BPL5PhylomeDB:Q5BPL5PRIDE:Q5BPL5
PRO:PR:Q5BPL5ProteinModelPortal:Q5BPL5Proteomes:UP000006548RefSeq:NP_849325.4
STRING:3702.AT4G06676.1TAIR:AT4G06676TCDB:2.A.121.3.3TMHMM:TMhelix
UniGene:At.50861UniProt:Q5BPL5
Coordinates (TAIR10) chr4:+:3898998..3901589
Molecular Weight (calculated) 36209.80 Da
IEP (calculated) 8.45
GRAVY (calculated) 0.57
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSKSKQVLL LWLEGFREAC SLHRVVILCL RSRKLLLRTG QCFLLNGLIF LGSLGVFKWF IDPSLQWILP DQCSPLTSQE FCSYGGFYAF LRGGLLQLFY
101: VFWFYPLYML SFILSNIWYN DIAKHGFEAI EISDLNSAEA LRQGEALASL NMANAERPSG LGGVMIGIGE QVYSILLLTF FFLEVCVVGV IPYIGKILNF
201: LLLSWMYAYY CYEYKWNFSG ISLKKRLDFF QSNWAFFAGF GSPCVLAIFF LSPLVSGALM AILFPLFVLT ATGSGPEKLI GAPRRTWKCA GLGKLPIFYI
301: ADTLSMLALS IFRLESPHEN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)