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AT1G42470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Patched family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Patched family protein; FUNCTIONS IN: hedgehog receptor activity; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Niemann-Pick C type protein (InterPro:IPR004765), Patched (InterPro:IPR003392), Sterol-sensing 5TM box (InterPro:IPR000731); BEST Arabidopsis thaliana protein match is: Patched family protein (TAIR:AT4G38350.1); Has 2676 Blast hits to 2177 proteins in 377 species: Archae - 64; Bacteria - 237; Metazoa - 1621; Fungi - 207; Plants - 110; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR54eggNOG:KOG1933EMBL:CP002684EnsemblPlants:AT1G42470
EnsemblPlants:AT1G42470.1entrez:840851GeneID:840851GO:GO:0005319
GO:GO:0005886GO:GO:0008158GO:GO:0009506GO:GO:0016021
Gramene:AT1G42470.1hmmpanther:PTHR10796hmmpanther:PTHR10796:SF117InParanoid:F4I9G5
InterPro:IPR000731InterPro:IPR003392InterPro:IPR004765InterPro:IPR032190
iPTMnet:F4I9G5KEGG:ath:AT1G42470KO:K12385ncoils:Coil
OMA:ITHAFSHPaxDb:F4I9G5Pfam:PF02460Pfam:PF16414
Pfscan:PS50156PRIDE:F4I9G5PROSITE:PS50156ProteinModelPortal:F4I9G5
Proteomes:UP000006548Reactome:R-ATH-265473RefSeq:NP_174975.2SMR:F4I9G5
STRING:3702.AT1G42470.1SUPFAM:SSF82866TAIR:AT1G42470TIGRfam:TIGR00917
TIGRFAMs:TIGR00917TMHMM:TMhelixUniGene:At.39097UniProt:F4I9G5
Coordinates (TAIR10) chr1:+:15926987..15935128
Molecular Weight (calculated) 140094.00 Da
IEP (calculated) 7.60
GRAVY (calculated) 0.18
Length 1272 amino acids
Sequence (TAIR10)
(BLAST)
0001: MQILFVGYGV EAKQSAGYCA MYDICGARSD GKVLNCPFNI PSVKPDDLLS SKIQSLCPTI TGNVCCTETQ FDTLRSQVQQ AIPFIVGCPA CLRNFLNLFC
0101: ELTCSPDQSL FINVTSTTKV KNNSTVDGIQ YYITDDFGAG MYESCKNVKF GSSNSRALDF LGAGAKNFKE WFTFIGQKAG VNLPGSPYGI AFLPTPPVSS
0201: GMRPMNVSIY SCGDESLGCS CGDCPSAATC SSKAEVPTQK KHSCSIKIGS LEVKCVDFIL AILYIVLVSL FLGGGLLHPV RGKKKTSQMG TLSEASGERN
0301: SVNQQKPDTI QSQMLQNTPQ RNWGQLSTVQ GHLANFYGKY GIWVARHPTL VLCLSVSVVL LLCVGLIRFK VETRPDKLWV GSGSRAAEEK QFFDTHLAPF
0401: YRIEQLIIAT VQTSSHEKAP EILTDDNIKL LFDIQKKVDG LRANHSGSMV SLTDICMKPL GEDCATQSVL QQYFKMKPEN YDDYGGVDHV KYCFEHFTST
0501: ESCLSAFKGP LDPTTALGGF SGNSFSEASA FLVTYPVDNF VDNKGNKTEK AVAWEKAFIQ LAKDELLPMV QAKNLTLSFS SESSIEEELK RESTADVITI
0601: AISYLVMFAY ISLTLGDSPR LKSFYITSKV LLGLSGVLLV MLSVLGSVGF FSAVGMKSTL IIMEVIPFLV LAVGVDNMCI LVHAVKRQEQ ELPLERRISN
0701: ALMEVGPSIT LASLAEILAF AVGAFIKMPA VRVFSMFAAL AVLLDFLLQI TAFVALIVFD FRRTEDKRVD CFPCIKTSKS SISAEKGVGQ RKAGLLTRYM
0801: KEVHAPVLSH WIVKIVVIAF FFGLAMAGIA LSTRIEPGLE QQIVLPQDSY LQGYFNNIST YLRIGPPLYF VLKNYNYSSE SRHTNQLCSI NKCNPNSLLN
0901: EIARASLTPE LSYIAKPAAS WLDDFLVWLS PEAFGCCRKF TNGTFCPPDD QPPCCPPGQT SCGLSEVCKD CTTCFRHADL SSDRPSTTQF KEKLPWFLNA
1001: LPSADCAKGG HGAYSSSVDL QGYANGIIQA SSFRTYHTPL NKQVDFVNSM RAAQEFSAKV SRSLKMEIYP YSVFYMFFEQ YLDIWKTALI NLSIAIAAVF
1101: VVCLIITCSF WSSAIILLVI AMIIIDLLGV MAVFHIQLNA LSVVNLIMSV GIAVEFCVHI THAFSHWGQK PSDERGVGWD GSFSFQWNYI DETSWGDCAR
1201: FLKIRSLCGV LLQDVFGTSP SRFLTRPCIF TGVLEHVWSS SKTCRRGKAR SSTFGFISTL GELVFLFCRF CL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)