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AT5G11700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IR49eggNOG:ENOG410XP5AEMBL:CP002688EnsemblPlants:AT5G11700
EnsemblPlants:AT5G11700.1entrez:831042ExpressionAtlas:F4JXY5GeneID:831042
GO:GO:0016021Gramene:AT5G11700.1hmmpanther:PTHR31513hmmpanther:PTHR31513:SF1
InterPro:IPR011641PaxDb:F4JXY5PRIDE:F4JXY5ProteinModelPortal:F4JXY5
Proteomes:UP000006548RefSeq:NP_196731.2SMART:SM01411STRING:3702.AT5G11700.2
TAIR:AT5G11700TMHMM:TMhelixUniGene:At.27066UniProt:F4JXY5
Coordinates (TAIR10) chr5:-:3762961..3771123
Molecular Weight (calculated) 152474.00 Da
IEP (calculated) 6.52
GRAVY (calculated) 0.02
Length 1419 amino acids
Sequence (TAIR10)
(BLAST)
0001: MARFQFCCVF VLVALAVLAV NPSSSYRFTI VEPKSGSDSD LDSDSESLLF HQDYSPPAPP PPPPHGPSVS CSEDLGGVGF LDTTCKIVAD LNLTHDVYIA
0101: GKGNFIILPG VRFHCPIPGC SIAINVSGNF SLGAESTIVA GTLELTAGNA SFANGSAVNT TGLAGSPPPQ TSGTPQGIDG AGGGHGGRGA CCLTDTKKLP
0201: EDVWGGDAYS WSTLQKPWSY GSKGGSTSRE IDYGGGGGGK VKMDILQLLD VNGSLLANGG YGGAKGGGGS GGSIYIKAYK MTGIGKISAC GGSGYGGGGG
0301: GRVSVDIFSR HDDPKIFVHG GYSIGCPDNS GAAGTLYDAV PRSLFVSNYN QTTDTYTLLL EFPFQPLWTN VYIQDKARAT CPLLWSRVQV QGQISLLCGG
0401: VLSFGLAHYG TSVFELLAEE LLMSDSTIKV YGALRMTVKM FLMWNSELHL DGGGGDTTVS TSMLEASNLF VLRGSSVIRS NANLGVHGQG FLNLTGPGDS
0501: IEAQRLVLSL FYRIYVGPGS ILRAPLLNAS RDAVTPKLYC ERQDCPYELL NPPEDCNVNA SLSFTLQICR VEDILVEGFI KGSVVHFHRA KTVTLEPSGE
0601: ISASGMGCRG GVGEGKLLGN GFGSGGGHGG KGGRVCYNNS CVEGGITYGN ANLPCELGSG SGDFSPGYSS AGGGIVVIGS MEQPLSGLSL EGSIRVDGES
0701: VKRLSRDENG SIVAPGGGSG GTVLLFLRYL ILGESSLLSS GGGSGSPGGG GGGGGGRIHF HWSNIPTGDI YQPIASVKGI IHARGGAAAD DGFYGKNGTI
0801: TGTACPKGLH GIFCKECPSG TFKNVTGSDP SLCRPCPVDE LPTRAVYVTV RGGVSETPCP YRCISERYHM PHCYTALEEL IYTFGGPWLF GLLLMGLLIL
0901: LALVLSVARM KFVGVDDLPG PAPTQHGSQI DHSFPFLESL NEVLETNRAE QSQSHVHRMY FMGPNTFSEP WHLSHIPPEE IKEIVYEAAF NTFVDEINSI
1001: AAYQWWEGAI YSILSVVAYP LAWSWQQWRR KMKLQKLREF VRSEYDHSCL RSCRSRALYE GLKVAATSDL MLAYLDFFLG GDEKRTDLPP RLHQRFPMPI
1101: LFGGDGSYMA PFSLQNDNIL TSLMSQLGSP TTWYRLVAGV NAQLRLVRRG RLRSTFHSVL RWLETHANPA LETHGIRVDL AWFQTTACGY CQYGLLIHTV
1201: EDCEPTSPQC VSETTWTEIQ PRKNYGGIID LDSLPSLKEK RDMFFLLSFL VHNTKPVGHQ DMVGLVISML LLGDFSLVLL TLLQLYSISL LDVLLALFIL
1301: PLGLLLPFPA GINALFSHGP RRSAGLARVY ALWNFMSLVN VFVAFLCGYV HYHSESSASK KIPFQPWNIN MGESEWWIFP AGLVVCKIMQ SQLINRHVAN
1401: LEIQDRSLYS KDYELFWQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)