AT5G47020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11700.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19082005..19089800 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 152789.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.53 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||
| Length | 1421 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MLGLVFLCVL LVSTPCFSLS QYGVTEFESS VRLFSDEASG NSTSSPISVT CQDLDGVGSL NTTCTLNSNL RFDSDVYVYG TGNLNILAHV LVDCPVEGCM 0101: ITFNVSGTIH LGQSARIVAG SVVFSAINLT MDSNSSIYTT ALAGPPPSQT SGTPYGIDGA GGGHGGRGAS CVKSNKTTYW GGDVYAWSSL HDPWSYGSEG 0201: GVKLSTKNIR GKGGGRVKLI LTDTVHVNGT VSADGGDAGE EGGGGSGGSI CIRAVKLKGY GKISASGGRG WGGGGGGRIS LDCYSIQEDV KVFVHGGASI 0301: GCPKNAGAAG TYFNAELVSL RVGNDNMTTE TETPLLDFPT RPLWSNIYVD NNAKVLVPLL WTRMQVGGQI SLYRGSSIVF GLSKYPISEF ELVAEELLMS 0401: NSVIKVFGAL RLVTKMLLML NSVIQIDGEG NPAVPSSVLE VRNLAVLKGK SVITSNTNLG VYGQGMLTLS GPGDAIKGQR LSLSQFYNIT VGPGSILQAP 0501: LDDYESKNAV TQTLCESKTC PIDLISPPDD CHVNYTLSFS LQICRVEDIL VRGLVKGSII QIHRARTVVV TDDGLITASG FGCSAGLGKG LYSNGAGSGA 0601: GHGGRGGSGI FNGRVCNGGH TYGDPDFPCE LGSGAESPDK SYGNVTGGGM IVIGSIQFPL LTLNLRGSLS SDGQSLWKPT ANGNRSLVGG VGGGSGGTIL 0701: LFLQMLELSK NSSLSVRGGR GGPLGGGGGG GGRLHFHWDM LHTGDEYSPV AIVKGSISNR GGAGDNGGRF GEEGTMTGKK CPKGLYGTFC LECPIGTYKN 0801: VEGSDKRLCT PCPPEHLPSR AKFVYVRGGV SEPVCPYKCV SEKYRLPNCY TPLEELVYTF GGPLPFTLLL SCVVVVLGLL LSTLSIKLLR LSFYGANSIE 0901: HQSAHCLPHL LSLSEVRGAK SEDTQTHAYR MYFMGPNNFR EPWHLPYSPP GAIIEIVYED AFNSFINEIN STAAYDWWEG SVHSILSVLA NPCAWSWKQW 1001: RRRRKIHRLQ EYVKSQYDHS CLRSCRSRAL YKGMKVGATP DLMVAYIDFF LGGDEKRVDM VSIIQKRFPM CILFGGDGSY MSPYSLHSDT LLTNLLGQHI 1101: PPSVWHRFVA GLNAQLRTVR HGSIRSALLP VIRWINSHGN PQLEFHGVRI ELGWFQATAS GYYQLGILVF VGDFPLNTVN RSLSFSRSDD ESPGNNSACP 1201: SKSLIELQQN LIQPGHGLSR KRINGGINGG LINEISLESL EYRRDLLFPF SLLLNNTRPV GRQDTLLRFI SILLLADLSV TLLALLQFYW LALAAFLAIL 1301: LILPLSLLCP FPAGLNALLS KEMRRASLTR IYGLWNATSL TNVIVAFICG VIHSGFFTDE LPNIWNAIRD DDKWWVLPTF LLLLKSIQAR FLDWHVANLE 1401: VPDFSLLCPD PDTFWAYESG A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)