AT3G11420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.510 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF604) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF604); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT2G37730.1); Has 709 Blast hits to 698 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 200; Plants - 281; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3591834..3594323 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58043.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.27 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||
| Length | 505 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKANRGGGEH GQHEALKLSS FFFMPERPRD YLVLFTRFSV LTCLIVSVSL VLRATFLSPS ARDYSTTYGL KLTAVPQKAI ALPPSASVGP TNISHIFFSI 101: AGAAETWIDR SQYISLWWRN TTRGFVWLDE PVKIPENHSD VRFSIPTRVS DPGWTRFKFS SSRAAVRIAR IIWDSYRLNL PNVRWFVMGD DDTVFFTENL 201: VKVLSKYDHE QMWYIGGNSE SVEQDVMHAY DMAFGGGGFA LSRPLAARLA AAMDDCLQRY FYFYGSDQRI ASCISEIGVP FTEERGFHQL DIRGDPYGFL 301: AAHPLAPLVS LHHLVYLDPM FPNKNPIESL QTLMKPYTLD PNRILQQINC HDRKRQWSIS ISWGYTIQIY TYFLTATELT TPLQTFKTWR SSSDGPFVFN 401: TRPLKPDPCE RPVTYFMDGA EDVRDSGTKT WYSIGDKNYG HCGKIEHTRL TKVKRILVTS MKTDPEYWNK APRRQCCEVM EGKVGKRKEK EMLLRIRKCR 501: SLEKI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)