AT2G12400.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:5005144..5008140 | ||||||||||||||||||||||||
Molecular Weight (calculated) | 60283.00 Da | ||||||||||||||||||||||||
IEP (calculated) | 7.51 | ||||||||||||||||||||||||
GRAVY (calculated) | 0.24 | ||||||||||||||||||||||||
Length | 541 amino acids | ||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MLCFRSQRVF ILVSLCLLSS FLVVVTGTTS ITGVGNEEER GVEEEWRTSV IERVIAEESG ENSSLILAAK RTRRKDPADN FKLYTGGWNI SNSHYLTSVG 101: YTAAPFIIIA LVWFVFFGLS LSLICLCYCC CARQSYGYSR VAYALSLILL ISFTIAAIIG CVFLYTGQGK FHASTTDTLD YVVSQANLTS ENLRNVSDYL 201: NAAKKVDVQS SILPQDVLSS IDNIQGKINS SATTLSVKTM ENQDKIQNVL DIMRLALVII AAVMLFLAFI GFLLSIFGLQ CLVYTLVILG WILVTVTFVL 301: CGGFLLLHNV VGDTCVAMDQ WVQNPTAHTA LDDILPCVDN ATARETLTRT KLVTYQLVNL LDNAISNMTN RNFPPQFRPL YYNQSGPLMP LLCNPFNADL 401: SDRQCQPGQV HLNNATEVWK NFTCQIVTPG TCSTPGRLTP KLYSQMAAAV NVSYGLYKYG PFLADLQGCD FVRSTFTDIE RDHCPGLKRY TQWIYVGLVV 501: VSASVMSSLV FWVIYARERR HRVYTKDYNA MHSEDPRSKG H |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)