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AT2G12400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:14517339 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKWYeggNOG:ENOG410Y00JEMBL:BT002043EMBL:CP002685
EnsemblPlants:AT2G12400EnsemblPlants:AT2G12400.1entrez:815712GeneID:815712
GO:GO:0009506GO:GO:0016021Gramene:AT2G12400.1hmmpanther:PTHR31414
hmmpanther:PTHR31414:SF1HOGENOM:HOG000239584KEGG:ath:AT2G12400OMA:RPLYYNQ
PhylomeDB:Q8H0U2Proteomes:UP000006548RefSeq:NP_178935.2TAIR:AT2G12400
TMHMM:TMhelixUniGene:At.14383UniProt:Q8H0U2
Coordinates (TAIR10) chr2:-:5005144..5008140
Molecular Weight (calculated) 60283.00 Da
IEP (calculated) 7.51
GRAVY (calculated) 0.24
Length 541 amino acids
Sequence (TAIR10)
(BLAST)
001: MLCFRSQRVF ILVSLCLLSS FLVVVTGTTS ITGVGNEEER GVEEEWRTSV IERVIAEESG ENSSLILAAK RTRRKDPADN FKLYTGGWNI SNSHYLTSVG
101: YTAAPFIIIA LVWFVFFGLS LSLICLCYCC CARQSYGYSR VAYALSLILL ISFTIAAIIG CVFLYTGQGK FHASTTDTLD YVVSQANLTS ENLRNVSDYL
201: NAAKKVDVQS SILPQDVLSS IDNIQGKINS SATTLSVKTM ENQDKIQNVL DIMRLALVII AAVMLFLAFI GFLLSIFGLQ CLVYTLVILG WILVTVTFVL
301: CGGFLLLHNV VGDTCVAMDQ WVQNPTAHTA LDDILPCVDN ATARETLTRT KLVTYQLVNL LDNAISNMTN RNFPPQFRPL YYNQSGPLMP LLCNPFNADL
401: SDRQCQPGQV HLNNATEVWK NFTCQIVTPG TCSTPGRLTP KLYSQMAAAV NVSYGLYKYG PFLADLQGCD FVRSTFTDIE RDHCPGLKRY TQWIYVGLVV
501: VSASVMSSLV FWVIYARERR HRVYTKDYNA MHSEDPRSKG H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)