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AT4G27350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1223)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1223); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1223 (InterPro:IPR010634); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1223) (TAIR:AT5G54240.1); Has 527 Blast hits to 527 proteins in 230 species: Archae - 0; Bacteria - 439; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5429eggNOG:ENOG410IH7TEMBL:AF337911EMBL:AL030978
EMBL:AL161566EMBL:AY113875EMBL:CP002687EnsemblPlants:AT4G27350
EnsemblPlants:AT4G27350.1entrez:828843GeneID:828843Gramene:AT4G27350.1
hmmpanther:PTHR36057hmmpanther:PTHR36057:SF1HOGENOM:HOG000242370IntAct:O81838
InterPro:IPR010634InterPro:IPR012336KEGG:ath:AT4G27350OMA:GRMLSND
Pfam:PF06764PhylomeDB:O81838PIR:T05759Proteomes:UP000006548
RefSeq:NP_194465.1SMR:O81838STRING:3702.AT4G27350.1SUPFAM:SSF52833
TAIR:AT4G27350UniGene:At.2344UniProt:O81838
Coordinates (TAIR10) chr4:-:13690979..13692621
Molecular Weight (calculated) 30380.30 Da
IEP (calculated) 7.25
GRAVY (calculated) -0.25
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRRLFACFG LKKSSTKPIS GGNNSAAVAA EIPAGDGPVL VQLFSSQGCK TSPAAEMLMS RLGRGDFDAQ IRGEDGGSGS PTMVLVFHVD YWDYKGWKDP
101: YGSSQWTVRQ KAYIEALNLD TMFTPQLVIQ GRSQLIGNEE ETLLKSISEA PRFPSPAFRA TFQRPTSETL QVSLTGALRM KVDGDGMDIM VAIYETGLVN
201: DCARGENEGR MLSNDYVVRK MEKMCTVKDV APKKPVSGTA HFTLWDGFNS SKCGVAVFLQ NSSLQIFGTQ SFKLPDEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)