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AT4G20170.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.496
plasma membrane 0.464
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF23)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Domain of unknown function (DUF23); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G44670.1); Has 199 Blast hits to 199 proteins in 36 species: Archae - 0; Bacteria - 27; Metazoa - 44; Fungi - 2; Plants - 116; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
EC:2.4.1.-eggNOG:ENOG410Z7P2eggNOG:KOG4735EMBL:AL022224
EMBL:AL161552EMBL:AY058866EMBL:BT000570EMBL:CP002687
EMBL:KJ138743EnsemblPlants:AT4G20170EnsemblPlants:AT4G20170.1entrez:827763
GeneID:827763GO:GO:0000139GO:GO:0016021GO:GO:0016757
GO:GO:0042546GO:GO:0071555Gramene:AT4G20170.1hmmpanther:PTHR21461
hmmpanther:PTHR21461:SF12HOGENOM:HOG000241963InterPro:IPR008166KEGG:ath:AT4G20170
OMA:SMSAYRGPaxDb:O65431Pfam:PF01697PhylomeDB:O65431
PIR:T05325Proteomes:UP000006548RefSeq:NP_193750.1STRING:3702.AT4G20170.1
TAIR:AT4G20170TMHMM:TMhelixUniGene:At.22276UniProt:O65431
Coordinates (TAIR10) chr4:+:10896810..10898794
Molecular Weight (calculated) 57785.90 Da
IEP (calculated) 8.56
GRAVY (calculated) -0.30
Length 504 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMVKEKEQN TKDKKLLVGV IWNFSAELKL TFMALLVLCT LATLLPFIPS SFSLSTSDFR FCISRFSSAV PLNTTTTVEE SSSSPSPEKN LDRVLDNGVI
101: KRTFTGYGSA AYNFVSMSAY RGGVNSFAVI GLSSKPLHVY GHPSYRCEWV SLDPTQDPIS TTGFKILTDW GYGRIYTTVV VNCTFSSISA VNPQNSGGTL
201: ILHATTGDPT LNLTDSISVL TEPPKSVDFD LYNSTKKTKK YDYLYCGSSL YGNLSPQRVR EWIAYHVRFF GERSHFVLHD AGGIHEEVFE VLKPWIELGR
301: VTLHDIRDQE RFDGYYHNQF MIVNDCLHRY RFMTKWMFFF DVDEFLHVPV KETISSVMES LEEYSQFTIE QMPMSSRICY SGDGPARTYR KWGIEKLAYR
401: DVKKVPRRDR KYAVQPENVF ATGVHMSQNL QGKTYHKAES KIRYFHYHGS ISQRREPCRQ LFNDSRVVFE NTPYVLDTTI CDVGLAVRTF ELRTIGDRLL
501: RTRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)