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AT1G69295.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 19223515
TAIR : plasma membrane 17317660
TAIR : plasma membrane 19223515
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plasmodesmata callose-binding protein 4
Curator
Summary (TAIR10)
Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.
Computational
Description (TAIR10)
plasmodesmata callose-binding protein 4 (PDCB4); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma, plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT1G26450.1); Has 31696 Blast hits to 10907 proteins in 912 species: Archae - 149; Bacteria - 8998; Metazoa - 7905; Fungi - 3090; Plants - 1809; Viruses - 608; Other Eukaryotes - 9137 (source: NCBI BLink).
Protein Annotations
CAZy:CBM43EMBL:AC018364EMBL:AF370153EMBL:AF412078
EMBL:AK118559EMBL:AK175349EMBL:AK175595EMBL:AK175601
EMBL:AK175695EMBL:AK175701EMBL:AK175748EMBL:AK175773
EMBL:AK175814EMBL:AK175832EMBL:AK175835EMBL:AK175881
EMBL:AK175916EMBL:AK176017EMBL:AK176076EMBL:AK176160
EMBL:AK176590EMBL:AY056376EMBL:AY059094EMBL:AY085640
EMBL:CP002684EnsemblPlants:AT1G69295EnsemblPlants:AT1G69295.1entrez:843261
GeneID:843261Genevisible:Q93V72GO:GO:0001872GO:GO:0005886
GO:GO:0009506GO:GO:0030247GO:GO:0031225hmmpanther:PTHR32227
hmmpanther:PTHR32227:SF67HOGENOM:HOG000238097InterPro:IPR012946KEGG:ath:AT1G69295
OMA:CKEGNEQPaxDb:Q93V72Pfam:PF07983Pfam:Q93V72
PIR:A96717PRIDE:Q93V72PRO:PR:Q93V72ProteinModelPortal:Q93V72
Proteomes:UP000006548RefSeq:NP_564957.1SMART:SM00768SMR:Q93V72
STRING:3702.AT1G69295.1TAIR:AT1G69295tair10-symbols:PDCB4TCDB:1.I.2.1.1
UniGene:At.21446UniGene:At.43640UniProt:Q93V72
Coordinates (TAIR10) chr1:-:26050492..26051843
Molecular Weight (calculated) 22077.70 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.20
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVLLPLCLI ISMFTYSNAA YCLCKEGNEQ VLQKAIDYAC GNGADCTQIQ PTGACYQPNT VKNHCDVAVN SYYQKKASSG ATCDFNGAAS PSTTPPSTAS
101: NCLTGSSSSG TPTTGTPTTG TPTSGTPTTG TPTTGTPTTG TPTSGTPTSG FPNTGTPNTG TNTGMPNSNG MPTSSSSSVF PGTTLGPTGS GGLGDPNAGE
201: KLSVRTNTVV FLLTGVAAML VI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)