suba logo
AT3G54680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : proteophosphoglycan-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
proteophosphoglycan-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; Has 4120 Blast hits to 443 proteins in 120 species: Archae - 2; Bacteria - 57; Metazoa - 120; Fungi - 93; Plants - 84; Viruses - 11; Other Eukaryotes - 3753 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3ZKeggNOG:ENOG4111ABEEMBL:AY123980EMBL:BT001032
EMBL:CP002686EnsemblPlants:AT3G54680EnsemblPlants:AT3G54680.1entrez:824633
GeneID:824633Gramene:AT3G54680.1KEGG:ath:AT3G54680OMA:KYTSINF
Proteomes:UP000006548RefSeq:NP_567006.1STRING:3702.AT3G54680.1TAIR:AT3G54680
UniGene:At.43131UniProt:Q8L7Z6
Coordinates (TAIR10) chr3:+:20244568..20245689
Molecular Weight (calculated) 22752.60 Da
IEP (calculated) 11.49
GRAVY (calculated) -0.91
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MAARANNKYT SINFNHILHK DPPSSSSSSS SASYSSVARS NGRMLVLTKS SPKPLRSPSA APTTTTTAPP ISTAPRIPSN QAISDPDPSQ ISLRPLGHTG
101: SSSSLSFPIR TPEINKAPEV NAPTPVSLSP KPDRFVPPHL RPGFVRKDEK PGLNSSRVRD PNPNLNQRLP NQEQPRQEYF GYGQPGRPKS GGYERIRTDP
201: RITGNRPGTS G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)