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AT1G02000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-D-glucuronate 4-epimerase 2
Curator
Summary (TAIR10)
UDP-D-glucuronate 4-epimerase
Computational
Description (TAIR10)
UDP-D-glucuronate 4-epimerase 2 (GAE2); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 3 (TAIR:AT4G00110.1); Has 43438 Blast hits to 43429 proteins in 2985 species: Archae - 785; Bacteria - 25993; Metazoa - 728; Fungi - 385; Plants - 1220; Viruses - 41; Other Eukaryotes - 14286 (source: NCBI BLink).
Protein Annotations
BRENDA:5.1.3.6EC:5.1.3.6eggNOG:COG0451eggNOG:ENOG410IU3F
EMBL:AC020622EMBL:AF334734EMBL:AK228396EMBL:AY084754
EMBL:CP002684EnsemblPlants:AT1G02000EnsemblPlants:AT1G02000.1entrez:839289
Gene3D:3.40.50.720GeneID:839289Genevisible:Q9LPC1GO:GO:0005975
GO:GO:0016021GO:GO:0032580GO:GO:0050378GO:GO:0050662
Gramene:AT1G02000.1gramene_pathway:5.1.3.6gramene_pathway:PWY-4861hmmpanther:PTHR10366
hmmpanther:PTHR10366:SF319HOGENOM:HOG000168000InParanoid:Q9LPC1InterPro:IPR001509
InterPro:IPR008089InterPro:IPR016040KEGG:ath:AT1G02000KO:K08679
OMA:YRSPISNPaxDb:Q9LPC1Pfam:PF01370Pfam:Q9LPC1
PhylomeDB:Q9LPC1PIR:A86152PRIDE:Q9LPC1PRINTS:PR01713
PRO:PR:Q9LPC1ProteinModelPortal:Q9LPC1Proteomes:UP000006548RefSeq:NP_171702.1
SMR:Q9LPC1STRING:3702.AT1G02000.1SUPFAM:SSF51735TAIR:AT1G02000
tair10-symbols:GAE2TMHMM:TMhelixUniGene:At.17005UniProt:Q9LPC1
Coordinates (TAIR10) chr1:+:346052..347356
Molecular Weight (calculated) 48135.80 Da
IEP (calculated) 10.48
GRAVY (calculated) -0.21
Length 434 amino acids
Sequence (TAIR10)
(BLAST)
001: MSHLDDIPST PGKFKMMDKS PFFLHRTRWQ SSVAKLAFWS LVFFGLLFIF FYRSPISNPD SSRRSLRTYS WGGPAWEKRV RSSARVRTRN GVSVLVTGAA
101: GFVGTHVSAA LKRRGDGVLG LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGFVNL
201: LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF
301: EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF
401: GYKPSTDLQT GLKKFVRWYL GYYKQGGKKV AAAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)