suba logo
AT3G06180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L34e superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L34e superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: Ribosomal protein L34e superfamily protein (TAIR:AT5G19025.1); Has 84 Blast hits to 84 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXVJeggNOG:ENOG410YMD7EMBL:AC018907EMBL:BT021988
EMBL:BT025029EMBL:CP002686EnsemblPlants:AT3G06180EnsemblPlants:AT3G06180.1
entrez:819792GeneID:819792GO:GO:0003735GO:GO:0005840
GO:GO:0006412GO:GO:0016021Gramene:AT3G06180.1hmmpanther:PTHR10759
hmmpanther:PTHR10759:SF3HOGENOM:HOG000238391InterPro:IPR008195KEGG:ath:AT3G06180
OMA:DLCCGPRPANTHER:PTHR10759PhylomeDB:Q9M8K0Proteomes:UP000006548
RefSeq:NP_187269.1TAIR:AT3G06180TMHMM:TMhelixUniGene:At.40559
UniProt:Q9M8K0
Coordinates (TAIR10) chr3:+:1871705..1873554
Molecular Weight (calculated) 26468.70 Da
IEP (calculated) 8.99
GRAVY (calculated) -0.18
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MLHLLLLSDE EHSTTNSMPP SSSASRSASN HSSSSSSSSS SLHLCKHSPS ATLDLLILIL VLFSGAFLLS SYFSYLFHSF SLLSSHFPSL SSLIFSDDED
101: LSSIPPASYF FAFAVFFAAS IAFLDLCCGP RSRKCRNPKC KGLKKAMEFD LQLQTEECVK SGATKEIDRL PWKGGSESNP DYECLRAELR RMAPPNGRAV
201: LLFRSRCGCP VAKLEGWGPK RGRRHKKSQA NLALKGGVDH R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)