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AT4G00430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21413151 (2011): plasma membrane
  • PMID:16635983 (2006): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : plasma membrane intrinsic protein 1;4
Curator
Summary (TAIR10)
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational
Description (TAIR10)
plasma membrane intrinsic protein 1;4 (PIP1;4); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.1); Has 10702 Blast hits to 10683 proteins in 2216 species: Archae - 88; Bacteria - 5147; Metazoa - 1472; Fungi - 442; Plants - 2512; Viruses - 2; Other Eukaryotes - 1039 (source: NCBI BLink).
Protein Annotations
BioGrid:13247eggNOG:COG0580eggNOG:KOG0223EMBL:AF013293
EMBL:AF195115EMBL:AL161471EMBL:AY099825EMBL:AY120785
EMBL:BT000330EMBL:BT006313EMBL:CP002687EMBL:D26609
EMBL:D85192EnsemblPlants:AT4G00430EnsemblPlants:AT4G00430.1entrez:827956
ExpressionAtlas:Q39196Gene3D:1.20.1080.10GeneID:827956Genevisible:Q39196
GO:GO:0005773GO:GO:0005886GO:GO:0006833GO:GO:0009414
GO:GO:0009506GO:GO:0015250GO:GO:0015254GO:GO:0015793
GO:GO:0016020GO:GO:0016021GO:GO:0034220hmmpanther:PTHR19139
hmmpanther:PTHR19139:SF169HOGENOM:HOG000288286InParanoid:Q39196IntAct:Q39196
InterPro:IPR000425InterPro:IPR022357InterPro:IPR023271KEGG:ath:AT4G00430
KO:K09872OMA:VKVGANKPANTHER:PTHR19139PaxDb:Q39196
Pfam:PF00230Pfam:Q39196PhylomeDB:Q39196PIR:T01528
PRIDE:Q39196PRINTS:PR00783PRO:PR:Q39196PROSITE:PS00221
ProteinModelPortal:Q39196Proteomes:UP000006548Reactome:R-ATH-432047RefSeq:NP_567178.1
scanprosite:PS00221SMR:Q39196STRING:3702.AT4G00430.1SUPFAM:SSF81338
SwissPalm:Q39196TAIR:AT4G00430tair10-symbols:PIP1;4tair10-symbols:PIP1E
tair10-symbols:TMP-CTIGRfam:TIGR00861TIGRFAMs:TIGR00861TMHMM:TMhelix
UniGene:At.20518UniGene:At.20892UniProt:Q39196
Coordinates (TAIR10) chr4:-:186143..187531
Molecular Weight (calculated) 30694.40 Da
IEP (calculated) 9.08
GRAVY (calculated) 0.38
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGKEEDVRV GANKFPERQP IGTSAQSTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFI ATFLFLYITV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)