suba logo
AT2G26690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: response to jasmonic acid stimulus, response to wounding; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1.1 (TAIR:AT1G12110.1); Has 7265 Blast hits to 7134 proteins in 1412 species: Archae - 0; Bacteria - 3658; Metazoa - 494; Fungi - 438; Plants - 2171; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3104eggNOG:KOG1237EMBL:AC003105EMBL:AJ011604
EMBL:AY099800EMBL:CP002685EnsemblPlants:AT2G26690EnsemblPlants:AT2G26690.1
entrez:817210GeneID:817210Genevisible:Q9SZY4GO:GO:0006857
GO:GO:0009611GO:GO:0009753GO:GO:0015293GO:GO:0016021
GO:GO:0042128Gramene:AT2G26690.1hmmpanther:PTHR11654hmmpanther:PTHR11654:SF85
HOGENOM:HOG000237400InParanoid:Q9SZY4InterPro:IPR000109InterPro:IPR018456
InterPro:IPR020846iPTMnet:Q9SZY4KEGG:ath:AT2G26690OMA:FDERDER
PANTHER:PTHR11654PaxDb:Q9SZY4Pfam:PF00854Pfam:Q9SZY4
PhylomeDB:Q9SZY4PIR:F84663PIR:T52608PRIDE:Q9SZY4
PRO:PR:Q9SZY4PROSITE:PS01022ProteinModelPortal:Q9SZY4Proteomes:UP000006548
RefSeq:NP_850084.1scanprosite:PS01022SMR:Q9SZY4STRING:3702.AT2G26690.1
SUPFAM:SSF103473TAIR:AT2G26690TCDB:2.A.17.3.18TMHMM:TMhelix
UniGene:At.383UniProt:Q9SZY4
Coordinates (TAIR10) chr2:-:11347347..11350916
Molecular Weight (calculated) 63576.10 Da
IEP (calculated) 9.28
GRAVY (calculated) 0.38
Length 577 amino acids
Sequence (TAIR10)
(BLAST)
001: MESKGSWTVA DAVDYKGRPA DKSKTGGWIT AALILGIEVV ERLSTMGIAV NLVTYLMETM HLPSSTSANI VTDFMGTSFL LCLLGGFLAD SFLGRFKTIG
101: IFSTIQALGT GALAVATKLP ELRPPTCHHG EACIPATAFQ MTILYVSLYL IALGTGGLKS SISGFGSDQF DDKDPKEKAH MAFFFNRFFF FISMGTLLAV
201: TVLVYMQDEV GRSWAYGICT VSMAIAIVIF LCGTKRYRYK KSQGSPVVQI FQVIAAAFRK RKMELPQSIV YLYEDNPEGI RIEHTDQFHL LDKAAIVAEG
301: DFEQTLDGVA IPNPWKLSSV TKVEEVKMMV RLLPIWATTI IFWTTYAQMI TFSVEQASTM RRNIGSFKIP AGSLTVFFVA AILITLAVYD RAIMPFWKKW
401: KGKPGFSSLQ RIAIGLVLST AGMAAAALVE QKRLSVAKSS SQKTLPISVF LLVPQFFLVG AGEAFIYTGQ LDFFITQSPK GMKTMSTGLF LTTLSLGFFV
501: SSFLVSIVKR VTSTSTDVGW LADNINHGRL DYFYWLLVIL SGINFVVYII CALWFKPTKG KDSVEKENGK GFSVEDC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)