AT3G14810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.690 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : mechanosensitive channel of small conductance-like 5 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
mechanosensitive channel of small conductance-like 5 (MSL5); INVOLVED IN: transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 4 (TAIR:AT1G53470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4971223..4974216 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100371.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.60 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 881 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAVDSTDRR DFIVNINGQE SGAVGATGSS SNAEGGNIWK ESSYDFWDGE KGKNDKKGDD EDEDGGSFHF RQRGERRHSS AELSDPPSKL IGQFLHKQRA 101: SGDEISLDVE LNMAELQSNT PPRPATASNT PRRGLTTISE SSSPVKTKVK ADAVRRRQNR TSLGGSSDEE GRNRDEAEVL KCGSKKPMLS RNKTKSRLQD 201: PPTPTHPAID KTEMKSGRRS GIFKSGFLGK SPKAGTPGRN GFEEEEEEDP FLDEDLPEEF KRDKLSFWVF LEWISLVLIV TSLVCSLTIH NLQRKTWWKL 301: DLWKWEVTVL VLICGRLVSS WIVRIIVFLV EKNFTWRKRV LYFVYGVRKS VQNCLWLGLV LLAWHFLFDK KVERETRSTA LRYVTRVLVC LLVALIIWLV 401: KTILVKVLAS SFHMSTYFDR IQESLFTQYV IETLSGPPLM EIQRMEEEEQ QVAEDVKSLE KLAGAKLPPA LKATVKSFMK VGKSPGLNRI GSKRGEDGEG 501: IRIDQLKRMN TKNVSAWNMK RLMNIILKGA ISTLDQNMQD TTQEDEDATH IRSEYEAKCA ARKIFHNVTE PGSRYIYLED FLRFLCEEEA ERAMALFEGA 601: SESDKISKSC LKNWVVKAFR ERRALALTLN DTKTAVDRLH RIINVVIGII IIIIWLLILG IATTRFLLVL SSQLLLVAFV FGNSCKTIFE AIIFLFVMHP 701: FDVGDRCEID GVQLVVEEMN ILTTVFLRYD NQKIIYPNSV LGTKPIANYY RSPDMGDAVE FCVHIATPPE KITAIKQRIL SYVDNKKDYW YPAPMIVFLS 801: MDDLNSVKIA VWLTHRMNHQ DMGERYIRRG LLLEEVGKTC RELDIEYRLY PLNINVRSLP PTANPTSSDR IPPSWMQQRG P |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)