AT1G78230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.614 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Outer arm dynein light chain 1 protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Outer arm dynein light chain 1 protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT4G03260.2); Has 24271 Blast hits to 14439 proteins in 747 species: Archae - 6; Bacteria - 9514; Metazoa - 8699; Fungi - 1002; Plants - 3127; Viruses - 44; Other Eukaryotes - 1879 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:29430226..29432516 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76555.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.55 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||
| Length | 681 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWLFCMFCHK HVHFIHPLLL LLLLSSVFCP LSLFSGCGRL YLVKHNLKTS AAIFNSGRHI GGFDCGRIKK CFLFFRRRFF FYIHRFGALA TSNRLRLISK 101: MKILPCFGFI RRKKNKGNSK PQKTQRILQI RLEEPVKPLE NDEPNNKDSP IKHESYDGED ERDDKDSTNR EFSKFHVHER AVESVKSKEE VTDTSENGDD 201: NDEDEGGHVS DPGLGKTTAW VTSPKLKRSC STLSKFNGRF HGSDLHDLKE TVPVSNESVR SHRSADRVML KKHSSMQILP SGSRRLWWKL FLWSHRNLHK 301: HRVSLKSQPL NKNQQSGYTS DFAEHNQSSH EEESTNYCAD FTNQSSNLWP HHNQWVAFSA ESSSMKRVDE WVRGLDVETV VPVNEDKDVL AIFPTSPNTE 401: RSPLGNVVQS GNVSEAIVHA NSLIQSLSKS SSVAHISSIG LKAIPSISHF TSLKSIDLSN NFIVQITPAS LPKGLHALNL SKNKISVIEG LRDLTRLRVL 501: DLSYNRISRI GQGLSNCTLI KELYLAGNKI SNVEGLHRLL KLIVLDLSFN KIATTKAIGQ LVANYNSLVA LNILGNPIQN NVGEDQLRKT VSSLLPKLVY 601: HNKQLIKPQR AREVLKDSVA RAAFGGGDSL HHRRKRTSTK SVVGSASPSV HHRGHIAKGR GSKNRSQRQL RKTSAAGTPS H |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)