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AT3G07360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant U-box 9
Curator
Summary (TAIR10)
Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
Computational
Description (TAIR10)
plant U-box 9 (PUB9); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 3234 Blast hits to 3002 proteins in 224 species: Archae - 0; Bacteria - 16; Metazoa - 312; Fungi - 206; Plants - 2395; Viruses - 3; Other Eukaryotes - 302 (source: NCBI BLink).
Protein Annotations
BioGrid:5259EC:6.3.2.-eggNOG:ENOG410XRTNeggNOG:KOG0167
EMBL:AC009853EMBL:AY075636EMBL:CP002686EnsemblPlants:AT3G07360
EnsemblPlants:AT3G07360.1entrez:819924ExpressionAtlas:Q9SRT0Gene3D:1.25.10.10
Gene3D:3.30.40.10GeneID:819924Genevisible:Q9SRT0GO:GO:0004842
GO:GO:0005634GO:GO:0005886GO:GO:0009738GO:GO:0016567
GO:GO:0016874GO:GO:0070696GO:GO:0071215hmmpanther:PTHR23315
hmmpanther:PTHR23315:SF75HOGENOM:HOG000238412InParanoid:Q9SRT0InterPro:IPR003613
InterPro:IPR011989InterPro:IPR013083InterPro:IPR016024iPTMnet:Q9SRT0
ncoils:CoilOMA:TGGVPCMPaxDb:Q9SRT0Pfam:PF04564
Pfam:Q9SRT0Pfscan:PS51698PhylomeDB:Q9SRT0PRIDE:Q9SRT0
PRO:PR:Q9SRT0PROSITE:PS51698ProteinModelPortal:Q9SRT0Proteomes:UP000006548
RefSeq:NP_566304.1SMART:SM00504SMR:Q9SRT0STRING:3702.AT3G07360.1
SUPFAM:SSF48371SUPFAM:SSF57850TAIR:AT3G07360tair10-symbols:ATPUB9
tair10-symbols:PUB9UniGene:At.21635UniPathway:UPA00143UniProt:Q9SRT0
Coordinates (TAIR10) chr3:+:2354884..2356613
Molecular Weight (calculated) 51282.10 Da
IEP (calculated) 8.48
GRAVY (calculated) -0.31
Length 460 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)