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AT1G06400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.867
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22974509 (2013): cytosol cell plate
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:24030099 (2013): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ras-related small GTP-binding family protein
Curator
Summary (TAIR10)
small GTP-binding protein (ara-2)
Computational
Description (TAIR10)
ARA-2; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1C (TAIR:AT5G45750.1); Has 26542 Blast hits to 26487 proteins in 734 species: Archae - 28; Bacteria - 140; Metazoa - 13950; Fungi - 3642; Plants - 2996; Viruses - 20; Other Eukaryotes - 5766 (source: NCBI BLink).
Protein Annotations
BioGrid:22392eggNOG:COG1100eggNOG:KOG0087EMBL:AC068143
EMBL:AF332428EMBL:AY065306EMBL:AY096439EMBL:CP002684
EMBL:D01024EnsemblPlants:AT1G06400EnsemblPlants:AT1G06400.1entrez:837151
Gene3D:3.40.50.300GeneID:837151Genevisible:P28185GO:GO:0003924
GO:GO:0005525GO:GO:0005622GO:GO:0005886GO:GO:0007264
GO:GO:0009733GO:GO:0015031GO:GO:0042546Gramene:AT1G06400.1
HOGENOM:HOG000233968InParanoid:P28185InterPro:IPR001806InterPro:IPR005225
InterPro:IPR027417KEGG:ath:AT1G06400OMA:KRMGCCSPaxDb:P28185
Pfam:P28185Pfam:PF00071Pfscan:PS51419PhylomeDB:P28185
PIR:JS0639PRIDE:P28185PRO:PR:P28185PROSITE:PS51419
ProteinModelPortal:P28185Proteomes:UP000006548Reactome:R-ATH-5620916RefSeq:NP_172128.1
SMR:P28185STRING:3702.AT1G06400.1SUPFAM:SSF52540TAIR:AT1G06400
tair10-symbols:ARA-2tair10-symbols:ARA2tair10-symbols:ATRAB11Etair10-symbols:ATRABA1A
TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.133UniGene:At.24592
UniProt:P28185
Coordinates (TAIR10) chr1:-:1951089..1952686
Molecular Weight (calculated) 23928.40 Da
IEP (calculated) 6.94
GRAVY (calculated) -0.31
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGYRADEEY DYLFKLVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATKTTKVEGK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LIYDVTRHAT
101: FENAARWLRE LRGHTDPNIV VMLIGNKCDL RHLVAVKTEE AKAFAERESL YFMETSALDA TNVENAFTEV LTQIHKIVSK RSVDGGGESA DLPGKGETIN
201: VKEDGSVLKR MGCCSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)