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AT3G15290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 3-hydroxyacyl-CoA dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 3-hydroxyacyl-CoA dehydrogenase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: fatty acid metabolic process, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), 3-hydroxyacyl-CoA dehydrogenase, NAD binding (InterPro:IPR006176), 3-hydroxyacyl-CoA dehydrogenase, C-terminal (InterPro:IPR006108), 3-hydroxyacyl-CoA dehydrogenase, conserved site (InterPro:IPR006180), NAD(P)-binding domain (InterPro:IPR016040), 3-hydroxyacyl-CoA dehydrogenase (InterPro:IPR022694); BEST Arabidopsis thaliana protein match is: multifunctional protein 2 (TAIR:AT3G06860.1); Has 14531 Blast hits to 13544 proteins in 1840 species: Archae - 475; Bacteria - 9128; Metazoa - 588; Fungi - 237; Plants - 152; Viruses - 0; Other Eukaryotes - 3951 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G15290-MONOMEReggNOG:COG1250eggNOG:KOG2304EMBL:AP000413
EMBL:BT000454EMBL:BT001208EMBL:CP002686EnsemblPlants:AT3G15290
EnsemblPlants:AT3G15290.1entrez:820760Gene3D:1.10.1040.10Gene3D:3.40.50.720
GeneID:820760GO:GO:0003857GO:GO:0005777GO:GO:0006631
GO:GO:0070403Gramene:AT3G15290.1gramene_pathway:1.1.1.35gramene_pathway:LYSINE-DEG2-PWY
gramene_pathway:PWY-5136hmmpanther:PTHR23309HOGENOM:HOG000141498InterPro:IPR006108
InterPro:IPR006176InterPro:IPR006180InterPro:IPR008927InterPro:IPR013328
InterPro:IPR016040InterPro:IPR022694KEGG:00062+4.2.1.17+1.1.1.35KEGG:00071+4.2.1.17+1.1.1.35
KEGG:00071+5.1.2.3+4.2.1.17+1.1.1.35KEGG:00120+1.1.1.35KEGG:00280+4.2.1.17+1.1.1.35KEGG:00281+4.2.1.17+1.1.1.35
KEGG:00310+4.2.1.17+1.1.1.35KEGG:00360+4.2.1.17KEGG:00362+4.2.1.17+1.1.1.35KEGG:00380+4.2.1.17+1.1.1.35
KEGG:00410+4.2.1.17KEGG:00592+4.2.1.17KEGG:00623+1.1.1.35KEGG:00627+4.2.1.17
KEGG:00640+4.2.1.17KEGG:00650+4.2.1.17+1.1.1.35KEGG:00650+5.1.2.3+4.2.1.17+1.1.1.35KEGG:00720+4.2.1.17+1.1.1.35
KEGG:00903+4.2.1.17KEGG:00930+4.2.1.17+1.1.1.35KEGG:ath:AT3G15290KO:K00074
OMA:VNDYPGFPfam:PF00725Pfam:PF02737PhylomeDB:Q9LDF5
PIRSF:PIRSF000105PROSITE:PS00067Proteomes:UP000006548Reactome:R-ATH-77310
Reactome:R-ATH-77346Reactome:R-ATH-77348Reactome:R-ATH-77350Reactome:R-ATH-77352
RefSeq:NP_188147.1scanprosite:PS00067SMR:Q9LDF5STRING:3702.AT3G15290.1
SUPFAM:SSF48179SUPFAM:SSF51735TAIR:AT3G15290UniGene:At.24398
unipathway:UPA00659UniProt:Q9LDF5
Coordinates (TAIR10) chr3:+:5145054..5146613
Molecular Weight (calculated) 31691.60 Da
IEP (calculated) 7.11
GRAVY (calculated) 0.03
Length 294 amino acids
Sequence (TAIR10)
(BLAST) 		001: MAEMKSVGVV GAGQMGSGIA QLAATSGLDV WLMDADRDAL SRATAAISSS VKRFVSKGLI SKEVGDDAMH RLRLTSNLED LCSADIIVEA IVESEDIKKK
101: LFKDLDGIAK SSAILASNTS SISITRLASA TRRPSQVIGM HFMNPPPIMK LVEIIRGADT SEETFLATKV LAERFGKTTV CSQDYAGFVV NRILMPMINE
201: AFHTLYTGVA TKEDIDSGMK HGTNHPMGPL ELADLIGLDV CLSVMKVLHE GLGDSKYAPC PLLVQYVDAG RLGRKRGVGV YDYREATQKL SPRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)