AT3G04560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 16 growth stages; Has 227 Blast hits to 225 proteins in 83 species: Archae - 0; Bacteria - 17; Metazoa - 98; Fungi - 29; Plants - 51; Viruses - 1; Other Eukaryotes - 31 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1227506..1229338 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 45881.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.94 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||
| Length | 417 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAENLFSGLP PPSSSQQQEL PISPIPDESK IETSSPAPIL VLKSALKRSK PEESAPNLSA PPVLKSALKR SKPSESTPEP VPEPEAPKKR LQFKTSTDAS 101: EEQVIEAMQK ITSHIKNPSK FSKASKLAIR LIQAGSVKPE TSSYFIAILE AAMSSKTPCT DRSVRADYHA LFSAAQDVAE CLDKSQKNLL TIWTFKAVVA 201: NDLFTDDSFM FSKTATRIKE AISDLPVSTE EDDVEEAAAL EEAAVKDNGD GQTTQDVAEA ASAGDNEAVE SDPFGLDAWI PSSGKKNGKT KIKRTNEDPD 301: AEENKRFLRS KREALITCLE IAARRYKVPW CQTVIDILVK HAFENVSRFT SQQRQAVEKL WASVREQHLR RKQGKSVTGK LDVTAFESLQ DKYANEKMSI 401: RSSVGASGER RAQQWLG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)