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AT3G04560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 16 growth stages; Has 227 Blast hits to 225 proteins in 83 species: Archae - 0; Bacteria - 17; Metazoa - 98; Fungi - 29; Plants - 51; Viruses - 1; Other Eukaryotes - 31 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK6YeggNOG:ENOG410ZBP2EMBL:AC011437EMBL:AY045801
EMBL:AY091439EMBL:CP002686EnsemblPlants:AT3G04560EnsemblPlants:AT3G04560.1
entrez:819612GeneID:819612Gramene:AT3G04560.1hmmpanther:PTHR36749
hmmpanther:PTHR36749:SF1HOGENOM:HOG000239621KEGG:ath:AT3G04560OMA:PWTQTAI
PhylomeDB:Q9SR18Proteomes:UP000006548RefSeq:NP_566231.1TAIR:AT3G04560
UniGene:At.48619UniGene:At.71013UniProt:Q9SR18
Coordinates (TAIR10) chr3:-:1227506..1229338
Molecular Weight (calculated) 45881.00 Da
IEP (calculated) 6.94
GRAVY (calculated) -0.58
Length 417 amino acids
Sequence (TAIR10)
(BLAST)
001: MAENLFSGLP PPSSSQQQEL PISPIPDESK IETSSPAPIL VLKSALKRSK PEESAPNLSA PPVLKSALKR SKPSESTPEP VPEPEAPKKR LQFKTSTDAS
101: EEQVIEAMQK ITSHIKNPSK FSKASKLAIR LIQAGSVKPE TSSYFIAILE AAMSSKTPCT DRSVRADYHA LFSAAQDVAE CLDKSQKNLL TIWTFKAVVA
201: NDLFTDDSFM FSKTATRIKE AISDLPVSTE EDDVEEAAAL EEAAVKDNGD GQTTQDVAEA ASAGDNEAVE SDPFGLDAWI PSSGKKNGKT KIKRTNEDPD
301: AEENKRFLRS KREALITCLE IAARRYKVPW CQTVIDILVK HAFENVSRFT SQQRQAVEKL WASVREQHLR RKQGKSVTGK LDVTAFESLQ DKYANEKMSI
401: RSSVGASGER RAQQWLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)