AT3G02860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc ion binding | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880); Has 2320 Blast hits to 1846 proteins in 229 species: Archae - 5; Bacteria - 112; Metazoa - 839; Fungi - 255; Plants - 88; Viruses - 6; Other Eukaryotes - 1015 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:625299..627157 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 35140.90 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.81 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.16 | ||||||||||||||||||||||||
| Length | 312 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDAQAKKKAM FRSKLNAKKK DTRIDSPLVR YNESDQPVCR VCNVVLKSES LWDVHQASRK HHEAIDSLKA SAAGVQRGSK PAETRPTKIE ALAKSSNSQT 101: SSGLPPNFFE NREPAREVEP AKSKNLEQSK HTIGSETNKS KGPLPAGFFD NQKTDSSNTK TTSEPKQSQT QTTGPETKPM VNGNLPTGFF DNKEADLLAH 201: GIKLVKPDIK DEYKEFEKLI QDDLQVVDSR MEEEEVDAAE TIEEEEQREQ RSYKEKVEIL KRKKMELKAA RLAKRSKTSE GSVKKPKKTE EESPSDEEDD 301: EDSAVDWRAQ HL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)