AT5G26610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : D111/G-patch domain-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
D111/G-patch domain-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), D111/G-patch (InterPro:IPR000467), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.1); Has 2550 Blast hits to 2366 proteins in 262 species: Archae - 4; Bacteria - 51; Metazoa - 1383; Fungi - 291; Plants - 280; Viruses - 14; Other Eukaryotes - 527 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:9375456..9376991 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34816.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.62 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.08 | ||||||||||||||||||||||||||||||||||||||||
| Length | 301 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDISRRESKT EASSREKRIY EKDQMNQESF IEGLAEEFRL PITHRVTENV DLEDVEQASL DVKISSSNVG FRLLQKMGWK GKGLGKQEQG ITEPIKSGIR 101: DRRLGLGKQE EDDYFTAEEN IQRKKLDIEI EETEEIAKKR EVLAEREQKI QSDVKEIRKV FYCELCSKQY RTVMEFEGHL SSYDHNHKKR FKEMKEMHGA 201: SGRDERKKRE QQRQEREMTK MADARKQHQM QQSQQEVPEN VPVSAPAKTT VAPLAVQDQR KTLKFGFSSK SGIISKSQPT SSIKKPKVAI ASVFGNDSDE 301: D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)