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AT4G30820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cdk-activating kinase assembly factor (MAT1) (InterPro:IPR004575), Cdk-activating kinase assembly factor, MAT1 (InterPro:IPR015877); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5220eggNOG:KOG3800EMBL:BT002819EMBL:BT004364
EMBL:CP002687EnsemblPlants:AT4G30820EnsemblPlants:AT4G30820.1EnsemblPlants:AT4G30820.2
EnsemblPlants:AT4G30820.3entrez:829205GeneID:829205GO:GO:0005634
GO:GO:0007049GO:GO:0016301Gramene:AT4G30820.1Gramene:AT4G30820.2
Gramene:AT4G30820.3hmmpanther:PTHR12683HOGENOM:HOG000265341IntAct:Q84K40
InterPro:IPR004575InterPro:IPR015877KEGG:ath:AT4G30820KO:K10842
OMA:EAFGSIWPANTHER:PTHR12683Pfam:PF06391PhylomeDB:Q84K40
Proteomes:UP000006548Reactome:R-ATH-113418Reactome:R-ATH-5696395Reactome:R-ATH-674695
Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-69273
Reactome:R-ATH-69656Reactome:R-ATH-72086Reactome:R-ATH-73776Reactome:R-ATH-73779
Reactome:R-ATH-75953Reactome:R-ATH-76042Reactome:R-ATH-77075RefSeq:NP_001078472.1
RefSeq:NP_567855.1RefSeq:NP_849476.1STRING:3702.AT4G30820.1TAIR:AT4G30820
UniGene:At.31803UniProt:Q84K40
Coordinates (TAIR10) chr4:+:15007144..15008378
Molecular Weight (calculated) 20078.70 Da
IEP (calculated) 6.14
GRAVY (calculated) -0.68
Length 178 amino acids
Sequence (TAIR10)
(BLAST)
001: MVMVSNSTHQ NKEIHVRRRI SEIYNRREEE FPSLKDYNDY LEEVECMVFD LIDGINVEAI EQKIKRYSKE NAEQIMINRA RKAEELTAAL AACKAKPPQT
101: DADTSSNHGV TAGTTYGQAS RPTGMGPQPV PIVGGAERQH YAMEDEATRR MKAERAGGFS LEISKRRALE EAFASIWV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)