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AT3G62140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: NEFA-interacting nuclear protein NIP30, N-terminal (InterPro:IPR019331); Has 398 Blast hits to 395 proteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111INNeggNOG:KOG4036EMBL:AY735628EMBL:AY924805
EMBL:CP002686EnsemblPlants:AT3G62140EnsemblPlants:AT3G62140.1entrez:825387
GeneID:825387Gramene:AT3G62140.1hmmpanther:PTHR13495hmmpanther:PTHR13495:SF0
HOGENOM:HOG000237815InterPro:IPR019331KEGG:ath:AT3G62140ncoils:Coil
OMA:PLGMIIKPfam:PF10187PhylomeDB:Q5XV94PRO:PR:Q5XV94
Proteomes:UP000006548RefSeq:NP_191773.2TAIR:AT3G62140UniGene:At.34174
UniGene:At.51009UniProt:Q5XV94
Coordinates (TAIR10) chr3:+:23007277..23008626
Molecular Weight (calculated) 24296.40 Da
IEP (calculated) 4.96
GRAVY (calculated) -1.16
Length 214 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDETEKPIR LLNFVSEEQL DESKKERGER VEDGTFQRDR ALYEILKENK DKKDAEFNER FKHRPPKALD EDETEFLDKL EMSKREYERQ LANEEDEQLR
101: NFQAAVAARS AILHEPKEAA LPPPAPVTKE QKPIGKRNPA TRPFKAIIKV KPQPKKAKAT EKEEKEIPGN GKPASHIDQA SLDSVKGNVT GKTTEGLQTG
201: LALVSYSDES EDDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)