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AT4G34140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D111/G-patch domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.2); Has 620 Blast hits to 588 proteins in 118 species: Archae - 0; Bacteria - 3; Metazoa - 423; Fungi - 53; Plants - 98; Viruses - 3; Other Eukaryotes - 40 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVDReggNOG:ENOG410YKNREMBL:CP002687EnsemblPlants:AT4G34140
EnsemblPlants:AT4G34140.1entrez:829562ExpressionAtlas:F4JKK9GeneID:829562
GO:GO:0003676Gramene:AT4G34140.1hmmpanther:PTHR13948hmmpanther:PTHR13948:SF19
InterPro:IPR000467PaxDb:F4JKK9Pfam:PF01585Pfscan:PS50174
PROSITE:PS50174ProteinModelPortal:F4JKK9Proteomes:UP000006548RefSeq:NP_195140.5
SMART:SM00443SMR:F4JKK9TAIR:AT4G34140UniGene:At.31524
UniProt:F4JKK9
Coordinates (TAIR10) chr4:+:16350942..16354022
Molecular Weight (calculated) 59669.60 Da
IEP (calculated) 4.63
GRAVY (calculated) -1.03
Length 530 amino acids
Sequence (TAIR10)
(BLAST)
001: MPDDDKELQE PKEEDSYVWD SDTQLYIHHS SGFYHDPNAG WYYCSKDGRY YKHENGEYVP LEYDESSVNP PGDIVTYEPS EDDLGRKCAF SQAENVENGC
101: EVSLSNPGET PSESTGCPND QEPEHRQRPS SWVEDTLIEL YLDGYNQHPS ASSYERASGE NNQDCQMLSA NGDDDAEELE EGEWIPEEDF DPQEENFGEA
201: APSSEEERWL AQYGQVIESP GKTLPEIPSV DLWDWKLVCE TREADNEQVA RLVGRLVRQS ANLHPSVVSG GTLLKTAPIC EARLHLVRVR TGQVYKLRNP
301: SAKYLASLSV YDASNPTKDW EFPDISTEWQ NPDTKRKAKK GKPKRASKLT VKPSEVDMIE EKTKRKAKKV KPKADCKLTV KPCEVDMFEE QETKREAKKV
401: KPKTDCKLTV KPRDEVNMIE EQRSCSYRDR AAERRNLHGG YGVGPGQKGT TVDHNTDEHS VPDTGSEEDT VAEALELSFG SGSYARRIMG NMGWKEGETL
501: GKNTKGLVEP IQAVGNTGNV GLGFPQRRRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)