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AT4G24900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 119 Blast hits to 96 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
BioGrid:13880eggNOG:ENOG410IGQ1eggNOG:ENOG410ZPSBEMBL:AL035523
EMBL:AL161562EMBL:AY099687EMBL:AY128869EMBL:CP002687
EnsemblPlants:AT4G24900EnsemblPlants:AT4G24900.1entrez:828592GeneID:828592
Genevisible:F4JRR5GO:GO:0005634GO:GO:0009793GO:GO:0009960
GO:GO:0046872hmmpanther:PTHR31198HOGENOM:HOG000243231InParanoid:F4JRR5
IntAct:F4JRR5InterPro:IPR028015KEGG:ath:AT4G24900OMA:YISKRAR
PaxDb:F4JRR5Pfam:F4JRR5Pfam:PF14968PIR:T05511
PRO:PR:F4JRR5Proteomes:UP000006548RefSeq:NP_194220.2STRING:3702.AT4G24900.1
TAIR:AT4G24900UniGene:At.44838UniProt:F4JRR5
Coordinates (TAIR10) chr4:+:12814867..12817388
Molecular Weight (calculated) 47522.40 Da
IEP (calculated) 8.21
GRAVY (calculated) -0.85
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKPSKKSEI EFCTVCRFHH DQGSRHKYFP RHKSSLSSLL DRFRSKIADV RFFLKNPSVL RPQEQSQNRV WCVFCDEDIV ELGSSFACSK AINHFASSDH
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQENYQVSQD KKQIDGSYNP PGVVGMTSIS SSHSTDAGGN VHSGAPPPWL
301: DANDGDFSSV QLNQSDVARF QAKVPGKNRK LNPNRVGAAW AERRKIEIEM EKSGHVTKSN IDPDWLPNFG RVWQSGTRKE SRKEFEKEKR KLVKTESIST
401: ESEPVKIQPY ISKRARRESG E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)