AT2G16940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Splicing factor, CC1-like | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Splicing factor, CC1-like; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Splicing factor, CC1-like (InterPro:IPR006509), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Splicing factor, CC1-like (TAIR:AT5G09880.1); Has 101521 Blast hits to 50249 proteins in 1917 species: Archae - 88; Bacteria - 8818; Metazoa - 50214; Fungi - 11566; Plants - 10292; Viruses - 445; Other Eukaryotes - 20098 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7342869..7347052 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63102.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.81 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.97 | ||||||||||||||||||||||||||||||||||||||||
| Length | 561 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDFDEYEYLE KTVENPHLEN EVGNGGGDEK VKSEGKERSR SSRHRGDKKK ERDEDEDGRR SKRSRSHHRS RSRDRERDRH RSSREHRDRD REKDVDKEER 101: NGKDRERDRD KDRDSKGRDH EKDRSRRSRS RSERHRSQER EKSLEIEPKE RETKDRDRDR RRHKDKKEDK VEPEADPERD QRTVFAYQIA LRATERDVYE 201: FFSRAGKVRD VRIIMDRISR RSRGIGYVEF YDTMSVPMAI ALSGQPLLGQ PVMVKPSEAE KNLVQSTTAA AGAGGMLGPY SGGARRLYVG NLHINMSEDD 301: LRKVFESFGS VELVQVPRDE TGLCKGFGFV QFARLEDARN ALNLNGQLEI AGRAIKVSAV TDQTEVPEAG QTQTTGDLDD DDGGGLSLNA QSRALLMQKL 401: DRSGTASSTG LTTAASFNGG VSTISSLAAP ALVQGSFPAV AGLAGSGIIP GVIPAGFDPI GVPSECLLLK NMFDPSTETE DDFDEDIKED VKEECSKFGK 501: LNHIFVDKNS VGFVYLRFEN AQAAIGAQRA LHGRWFAGKM ITATYMTTEA YEAKFPESKV V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)