AT3G53500.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||
| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | ||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||
| Computational Description (TAIR10) |
RSZ32; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: arginine/serine-rich zinc knuckle-containing protein 33 (TAIR:AT2G37340.1); Has 25826 Blast hits to 22471 proteins in 477 species: Archae - 0; Bacteria - 10; Metazoa - 6096; Fungi - 978; Plants - 1426; Viruses - 16372; Other Eukaryotes - 944 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
|
||||||||||||
| Coordinates (TAIR10) | chr3:-:19834557..19835896 | ||||||||||||
| Molecular Weight (calculated) | 26773.60 Da | ||||||||||||
| IEP (calculated) | 10.61 | ||||||||||||
| GRAVY (calculated) | -1.44 | ||||||||||||
| Length | 243 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKRDYAFVEF SDPRDADDAR YYLDGRDFDG SRITVEASRG APRGSRDNGS RGPPPGSGRC FNCGVDGHWA RDCTAGDWKN KCYRCGERGH IERNCKNSPS 101: PKKARQGGSY SRSPVKSRSP RRRRSPSRSR SYSRGRSYSR SRSPVRREKS VEDRSRSPKA MERSVSPKGR DQSLSPDRKV IDASPKRGSD YDGSPKENGN 201: GRNSASPIVG GGESPVGLNG QDRSPIDDEA ELSRPSPKGS ESP |
||||||||||||
| See Also |
|
||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)