AT3G52660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G00830.2); Has 39411 Blast hits to 22154 proteins in 1003 species: Archae - 84; Bacteria - 1991; Metazoa - 19033; Fungi - 3968; Plants - 4828; Viruses - 731; Other Eukaryotes - 8776 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19522598..19524735 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52081.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.75 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 471 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRTRTAASE AHDSMESEER VDLDGDNDPE EILEEEVEYE EVEEEEIEEI EEEIEEEVEV EEEEEEEDAV ATEEEEEKKR HVELLALPPH GSEVYLGGIP 101: TDATEGDLKG FCGSIGEVTE VRIMREKDSG DGKGYAFVTF RSKDLAAEAI DTLNNTDFRG KRIKCSTTQA KHRLFLGNVP RNWMESDIKK AANRIGPGVQ 201: IVELPKEPQN MGRNRGFAFI EYYNHACAEY SKQKMSNPSF KLDDNAPTVS WAESRSGGGG DSSASQVKAL YIKNLPRDIT QERLKALFEH HGKILKVVIP 301: PAKPGKEDSR YGFVHYAERT SVMRALKNTE RYEIDGHMLD CTLAKPQADQ KTNTNTVQNV QKSQLQPNYP PLLSYGMAPS PFGALGGFGA SAYSQPLMHA 401: GGHAAGGMSM MPIMLPDGRI GYVLQQPGLA AMPQPPPRHS PPYRGGSGSS SSSGSKRSSD NGRGRSRYNP Y |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)