AT1G04080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PRP39; FUNCTIONS IN: binding; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1); Has 3917 Blast hits to 3180 proteins in 483 species: Archae - 0; Bacteria - 599; Metazoa - 1588; Fungi - 801; Plants - 439; Viruses - 72; Other Eukaryotes - 418 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:1051803..1056550 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85246.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.63 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||
| Length | 768 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDSEAMVSE GYTSAPYGDY NASAATVEST GQETAPIVDA SHSVNNDSLV NGTAPVENGS ATDNVAVTAP AAEHGDNTGS TLSTEEERLW NIVRANSLEF 101: NAWTALIDET ERIAQDNIAK IRKVYDAFLA EFPLCYGYWK KFADHEARVG AMDKVVEVYE RAVLGVTYSV DIWLHYCTFA INTYGDPETI RRLFERALVY 201: VGTDFLSSPL WDKYIEYEYM QQDWSRVALI YTRILENPIQ NLDRYFSSFK ELAETRPLSE LRSAEESAAA AVAVAGDASE SAASESGEKA DEGRSQVDGS 301: TEQSPKLESA SSTEPEELKK YVGIREAMYI KSKEFESKII GYEMAIRRPY FHVRPLNVAE LENWHNYLDF IERDGDFNKV VKLYERCVVT CANYPEYWIR 401: YVTNMEASGS ADLAENALAR ATQVFVKKQP EIHLFAARLK EQNGDIAGAR AAYQLVHSEI SPGLLEAVIK HANMEYRLGN LDDAFSLYEQ VIAVEKGKEH 501: STILPLLYAQ YSRFSYLVSR DAEKARRIIV EALDHVQPSK PLMEALIHFE AIQPPPREID YLEPLVEKVI KPDADAQNIA SSTEREELSL IYIEFLGIFG 601: DVKSIKKAED QHVKLFYPHR STSELKKRSA DDFLASDRTK MAKTYNGTPP AQPVSNAYPN AQAQWSGGYA AQPQTWPPAQ AAPAQPQQWN PAYGQQAAYG 701: AYGGYPAGYT APQAPTPVPQ AAAYGAYPAQ TYPTQSYAPP VAAAAPAAAP VQQPAAAVAP QAYYNTYY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)