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AT1G35460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G09180.1); Has 1965 Blast hits to 1959 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 1958; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:25670eggNOG:ENOG410J048eggNOG:ENOG410YNY7EMBL:AC023064
EMBL:AF411791EMBL:AF488612EMBL:AY093794EMBL:CP002684
EnsemblPlants:AT1G35460EnsemblPlants:AT1G35460.1entrez:840438Gene3D:4.10.280.10
GeneID:840438Genevisible:Q9C8P8GO:GO:0001046GO:GO:0001228
GO:GO:0003700GO:GO:0005634GO:GO:0006355GO:GO:0006366
GO:GO:0042335GO:GO:0045944Gramene:AT1G35460.1hmmpanther:PTHR16223
hmmpanther:PTHR16223:SF36HOGENOM:HOG000095218InParanoid:Q9C8P8InterPro:IPR011598
iPTMnet:Q9C8P8KEGG:ath:AT1G35460ncoils:CoilOMA:CKCKPKE
PaxDb:Q9C8P8Pfam:PF00010Pfam:Q9C8P8Pfscan:PS50888
PhylomeDB:Q9C8P8PIR:F86475PRIDE:Q9C8P8PRO:PR:Q9C8P8
PROSITE:PS50888ProteinModelPortal:Q9C8P8Proteomes:UP000006548RefSeq:NP_174776.1
SMART:SM00353SMR:Q9C8P8STRING:3702.AT1G35460.1SUPFAM:SSF47459
TAIR:AT1G35460UniGene:At.18017UniProt:Q9C8P8
Coordinates (TAIR10) chr1:+:13040092..13041907
Molecular Weight (calculated) 28528.20 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.78
Length 259 amino acids
Sequence (TAIR10)
(BLAST)
001: MQSTHISGGS SGGGGGGGGE VSRSGLSRIR SAPATWIETL LEEDEEEGLK PNLCLTELLT GNNNSGGVIT SRDDSFEFLS SVEQGLYNHH QGGGFHRQNS
101: SPADFLSGSG SGTDGYFSNF GIPANYDYLS TNVDISPTKR SRDMETQFSS QLKEEQMSGG ISGMMDMNMD KIFEDSVPCR VRAKRGCATH PRSIAERVRR
201: TRISDRIRRL QELVPNMDKQ TNTADMLEEA VEYVKALQSQ IQELTEQQKR CKCKPKEEQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)