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AT2G06010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22923678 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : OBP3-responsive gene 4
Curator
Summary (TAIR10)
encodes a novel protein whose expression level is induced in lines overexpressing salicylic-acid (SA)-inducible Arabidopsis DNA binding with one finger (Dof) transcription factor, called OBF-binding protein 3.
Computational
Description (TAIR10)
OBP3-responsive gene 4 (ORG4); Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:815155eggNOG:ENOG410IHJKeggNOG:ENOG4111QJ2EMBL:AC006413
EMBL:AY072356EMBL:AY114726EMBL:CP002685EnsemblPlants:AT2G06010
EnsemblPlants:AT2G06010.1entrez:815155GeneID:815155GO:GO:0009536
GO:GO:0009751Gramene:AT2G06010.1hmmpanther:PTHR35710hmmpanther:PTHR35710:SF1
HOGENOM:HOG000240833KEGG:ath:AT2G06010OMA:FDLRIGWPhylomeDB:Q8VY85
PIR:B84474Proteomes:UP000006548RefSeq:NP_565333.1STRING:3702.AT2G06010.1
TAIR:AT2G06010tair10-symbols:ORG4UniGene:At.41121UniProt:Q8VY85
Coordinates (TAIR10) chr2:+:2336841..2338391
Molecular Weight (calculated) 21542.10 Da
IEP (calculated) 8.22
GRAVY (calculated) -0.34
Length 188 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPPSSRPEE PPSWEDLYKI NLMPSELFLK FRKELQGLRV GVNLELYNEP TNDYHAKLVL KPLCPERKWK FIYEPLHQEV RVLSKKIPVT RFLNLQVGVG
101: HNFQMNAIGW KWKLTSCLGG DGVSRIRNKT TLGLSPGIDF RFGWRADFVL PEVTGALGTE EPLFNMSSGR LEASLDRVEA IVTHSDYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)